utils::sessionInfo()
## R Under development (unstable) (2024-03-18 r86148)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 22.04.4 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.19-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.7.5 BiocStyle_2.31.0
##
## loaded via a namespace (and not attached):
## [1] splines_4.4.0
## [2] BiocIO_1.13.0
## [3] bitops_1.0-7
## [4] ggplotify_0.1.2
## [5] filelock_1.0.3
## [6] tibble_3.2.1
## [7] polyclip_1.10-6
## [8] XML_3.99-0.16.1
## [9] lifecycle_1.0.4
## [10] lattice_0.22-5
## [11] MASS_7.3-60.2
## [12] magrittr_2.0.3
## [13] plotly_4.10.4
## [14] sass_0.4.9
## [15] rmarkdown_2.26
## [16] jquerylib_0.1.4
## [17] yaml_2.3.8
## [18] BRGenomics_1.15.1
## [19] plotrix_3.8-4
## [20] cowplot_1.1.3
## [21] DBI_1.2.2
## [22] RColorBrewer_1.1-3
## [23] lubridate_1.9.3
## [24] abind_1.4-5
## [25] zlibbioc_1.49.3
## [26] GenomicRanges_1.55.4
## [27] purrr_1.0.2
## [28] ggraph_2.2.1
## [29] BiocGenerics_0.49.1
## [30] RCurl_1.98-1.14
## [31] yulab.utils_0.1.4
## [32] tweenr_2.0.3
## [33] rappdirs_0.3.3
## [34] GenomeInfoDbData_1.2.11
## [35] IRanges_2.37.1
## [36] S4Vectors_0.41.4
## [37] enrichplot_1.23.1
## [38] ggrepel_0.9.5
## [39] tidytree_0.4.6
## [40] ChIPseeker_1.39.0
## [41] codetools_0.2-19
## [42] DelayedArray_0.29.9
## [43] DOSE_3.29.2
## [44] ggforce_0.4.2
## [45] tidyselect_1.2.1
## [46] aplot_0.2.2
## [47] farver_2.1.1
## [48] viridis_0.6.5
## [49] base64enc_0.1-3
## [50] matrixStats_1.2.0
## [51] stats4_4.4.0
## [52] BiocFileCache_2.11.1
## [53] GenomicAlignments_1.39.4
## [54] jsonlite_1.8.8
## [55] tidygraph_1.3.1
## [56] tools_4.4.0
## [57] treeio_1.27.0
## [58] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [59] Rcpp_1.0.12
## [60] glue_1.7.0
## [61] gridExtra_2.3
## [62] SparseArray_1.3.4
## [63] xfun_0.42
## [64] DESeq2_1.43.4
## [65] qvalue_2.35.0
## [66] MatrixGenerics_1.15.0
## [67] GenomeInfoDb_1.39.9
## [68] dplyr_1.1.4
## [69] withr_3.0.0
## [70] BiocManager_1.30.22
## [71] fastmap_1.1.1
## [72] boot_1.3-30
## [73] fansi_1.0.6
## [74] caTools_1.18.2
## [75] digest_0.6.35
## [76] mime_0.12
## [77] timechange_0.3.0
## [78] R6_2.5.1
## [79] gridGraphics_0.5-1
## [80] seqPattern_1.35.0
## [81] colorspace_2.1-0
## [82] GO.db_3.18.0
## [83] gtools_3.9.5
## [84] RSQLite_2.3.5
## [85] utf8_1.2.4
## [86] tidyr_1.3.1
## [87] generics_0.1.3
## [88] data.table_1.15.2
## [89] rtracklayer_1.63.1
## [90] bsplus_0.1.4
## [91] graphlayouts_1.1.1
## [92] httr_1.4.7
## [93] htmlwidgets_1.6.4
## [94] S4Arrays_1.3.6
## [95] scatterpie_0.2.1
## [96] downloadthis_0.3.3
## [97] pkgconfig_2.0.3
## [98] gtable_0.3.4
## [99] blob_1.2.4
## [100] impute_1.77.0
## [101] XVector_0.43.1
## [102] shadowtext_0.1.3
## [103] htmltools_0.5.7
## [104] bookdown_0.38
## [105] fgsea_1.29.0
## [106] scales_1.3.0
## [107] Biobase_2.63.0
## [108] png_0.1-8
## [109] ggfun_0.1.4
## [110] knitr_1.45
## [111] tzdb_0.4.0
## [112] reshape2_1.4.4
## [113] rjson_0.2.21
## [114] nlme_3.1-164
## [115] curl_5.2.1
## [116] cachem_1.0.8
## [117] stringr_1.5.1
## [118] BiocVersion_3.19.1
## [119] KernSmooth_2.23-22
## [120] parallel_4.4.0
## [121] HDO.db_0.99.1
## [122] AnnotationDbi_1.65.2
## [123] restfulr_0.0.15
## [124] pillar_1.9.0
## [125] grid_4.4.0
## [126] vctrs_0.6.5
## [127] gplots_3.1.3.1
## [128] dbplyr_2.5.0
## [129] evaluate_0.23
## [130] magick_2.8.3
## [131] readr_2.1.5
## [132] GenomicFeatures_1.55.4
## [133] cli_3.6.2
## [134] locfit_1.5-9.9
## [135] compiler_4.4.0
## [136] Rsamtools_2.19.4
## [137] rlang_1.1.3
## [138] crayon_1.5.2
## [139] labeling_0.4.3
## [140] plyr_1.8.9
## [141] fs_1.6.3
## [142] stringi_1.8.3
## [143] genomation_1.35.0
## [144] viridisLite_0.4.2
## [145] gridBase_0.4-7
## [146] BiocParallel_1.37.1
## [147] munsell_0.5.0
## [148] Biostrings_2.71.4
## [149] lazyeval_0.2.2
## [150] GOSemSim_2.29.1
## [151] Matrix_1.6-5
## [152] BSgenome_1.71.2
## [153] hms_1.1.3
## [154] patchwork_1.2.0
## [155] bit64_4.0.5
## [156] ggplot2_3.5.0
## [157] KEGGREST_1.43.0
## [158] highr_0.10
## [159] SummarizedExperiment_1.33.3
## [160] AnnotationHub_3.11.3
## [161] igraph_2.0.3
## [162] memoise_2.0.1
## [163] bslib_0.6.1
## [164] ggtree_3.11.1
## [165] fastmatch_1.1-4
## [166] bit_4.0.5
## [167] ape_5.7-1