Package: annotation
Version: 1.0.0
Depends: R (>= 3.3.0), VariantAnnotation, AnnotationHub,
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        Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome,
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Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: arrays
Version: 0.1
Depends: R (>= 3.0.0)
Suggests: affy, limma, hgfocuscdf, knitr, rmarkdown
License: Artistic-2.0

Package: cytofWorkflow
Version: 1.0.2
Depends: R (>= 3.4.0)
Imports: BiocStyle, knitr, readxl, matrixStats, flowCore, ggplot2,
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Suggests: knitcitations
License: Artistic-2.0

Package: eQTL
Version: 0.99.128835
Depends: R (>= 3.4.0)
Imports: knitcitations, bibtex, GenomeInfoDb, S4Vectors, GGtools,
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        SNPlocs.Hsapiens.dbSNP144.GRCh37, reshape2, ggplot2
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: ExpressionNormalizationWorkflow
Version: 1.2.0
Imports: Biobase (>= 2.24.0), limma (>= 3.20.9), lme4 (>= 1.1.7),
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Suggests: knitr
License: GPL (>= 3)

Package: generegulation
Version: 1.0.0
Depends: R (>= 3.3.0), BSgenome.Scerevisiae.UCSC.sacCer3, Biostrings,
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        org.Sc.sgd.db, seqLogo
Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: liftOver
Version: 0.99.129508
Depends: R (>= 3.4.0)
Imports: gwascat, GenomicRanges, rtracklayer, Homo.sapiens,
        BiocGenerics
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: methylationArrayAnalysis
Version: 0.99.7
Depends: R (>= 3.3.0)
Suggests: knitr, rmarkdown, BiocStyle, limma, minfi,
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        matrixStats, minfiData, Gviz, DMRcate, stringr,
        FlowSorted.Blood.450k
License: Artistic-2.0

Package: proteomics
Version: 1.0.0
Depends: R (>= 3.3.0), mzR, mzID, MSnID, MSnbase, rpx, MLInterfaces,
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Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: RNAseq123
Version: 1.0.0
Depends: R (>= 3.3.0), Glimma (>= 1.1.9), limma, edgeR, Mus.musculus
Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: rnaseqGene
Version: 1.0.0
Depends: R (>= 3.3.0), BiocStyle, airway, Rsamtools, GenomicFeatures,
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        genefilter, AnnotationDbi, org.Hs.eg.db, ReportingTools, Gviz,
        sva, fission,
Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: RnaSeqGeneEdgeRQL
Version: 0.99.18
Depends: R (>= 3.3.0), edgeR, gplots, org.Mm.eg.db, GO.db
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: sequencing
Version: 1.0.0
Depends: R (>= 3.3.0), GenomicRanges, GenomicAlignments, Biostrings,
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        VariantAnnotation, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
        RNAseqData.HNRNPC.bam.chr14
Suggests: knitr, rmarkdown
License: Artistic-2.0

Package: TCGAWorkflow
Version: 0.99.73
Depends: R (>= 3.3.0)
Imports: AnnotationHub, knitr, ELMER, biomaRt,
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        GenomicRanges, GenomeInfoDb, ggplot2, ggthemes, graphics,
        minet, MotIV, motifStack, pathview, pbapply, parallel, rGADEM,
        RTCGAToolbox, SummarizedExperiment, TCGAbiolinks,
        TCGAWorkflowData, DT
Suggests: roxygen2 (>= 5.0.0)
License: Artistic-2.0

Package: testproj
Version: 0.99.130670
Depends: R (>= 3.4.0)
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: variants
Version: 0.99.129254
Depends: R (>= 3.4.0)
Imports: VariantAnnotation, cgdv17, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
        PolyPhen.Hsapiens.dbSNP131
Suggests: knitr, knitcitations
License: Artistic-2.0