# Seamless navigation through combined results of set-based and network-based enrichment analysis

## Documentation for package ‘EnrichmentBrowser’ version 2.8.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

comb.ea.results | Combining enrichment analysis results
compile.grn.from.kegg | Compilation of a gene regulatory network from KEGG pathways
config.ebrowser | Configuring the EnrichmentBrowser
de.ana | Differential expression analysis between two sample groups
download.kegg.pathways | Download of KEGG pathways for a particular organism
ea.browse | Exploration of enrichment analysis results
ebrowser | Seamless navigation through enrichment analysis results
exprs.heatmap | Visualization of gene expression
get.go.genesets | Definition of gene sets according to the Gene Ontology (GO)
get.kegg.genesets | Definition of gene sets according to KEGG pathways for a specified organism
ggea | Network-based enrichment analysis (NBEA)
ggea.graph | GGEA graphs of consistency between regulation and expression
ggea.graph.legend | GGEA graphs of consistency between regulation and expression
gs.ranking | Exploration of enrichment analysis results
gsea | Set-based enrichment analysis (SBEA)
id.types | Mapping between gene ID types for feature names of an expression set
isAvailable | Is a required package available?
make.example.data | Example data for the EnrichmentBrowser package
map.ids | Mapping between gene ID types for feature names of an expression set
nbea | Network-based enrichment analysis (NBEA)
nbea.methods | Network-based enrichment analysis (NBEA)
normalize | Normalization of microarray and RNA-seq expression data
ora | Set-based enrichment analysis (SBEA)
parse.genesets.from.GMT | Reading from and writing to GMT file format for gene sets
pdistr | Visualization of gene expression
probe.2.gene.eset | Transformation of probe level expression to gene level expression
read.eset | Reading gene expression data from file
sbea | Set-based enrichment analysis (SBEA)
sbea.methods | Set-based enrichment analysis (SBEA)
volcano | Visualization of gene expression
writeGMT | Reading from and writing to GMT file format for gene sets