Package: LymphoSeq
Title: Analyze high-throughput sequencing of T and B cell receptors
Version: 1.6.0
Author: David Coffey <dcoffey@fredhutch.org>
Maintainer: David Coffey <dcoffey@fredhutch.org>
Description: This R package analyzes high-throughput sequencing of T
        and B cell receptor complementarity determining region 3 (CDR3)
        sequences generated by Adaptive Biotechnologies' ImmunoSEQ
        assay.  Its input comes from tab-separated value (.tsv) files
        exported from the ImmunoSEQ analyzer.
Depends: R (>= 3.3), LymphoSeqDB
Imports: data.table, plyr, dplyr, reshape, VennDiagram, ggplot2, ineq,
        RColorBrewer, circlize, grid, utils, stats, ggtree, msa,
        Biostrings, phangorn, stringdist, UpSetR
License: Artistic-2.0
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, pheatmap, wordcloud, rmarkdown
VignetteBuilder: knitr
biocViews: Software, Technology, Sequencing, TargetedResequencing,
        Alignment, MultipleSequenceAlignment
NeedsCompilation: no
Packaged: 2017-10-31 02:54:50 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 16:55:00 UTC; unix
