TCGAbiolinks-package	TCGAbiolinks
batch.info	batch.info
bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf	bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf
BRCA_rnaseqv2	BRCA_rnaseqv2
calculate.pvalues	calculate.pvalues
chol_maf	chol_maf
clinBRCA	clinBRCA
clinical.biotab	clinical.biotab
colDataPrepare	colDataPrepare
dataBRCA	dataBRCA
dataDEGsFiltLevel	dataDEGsFiltLevel
dataREAD	dataREAD
dataREAD_df	dataREAD_df
diffmean	diffmean
gaiaCNVplot	gaiaCNVplot
gbm.exp.harmonized	gbm.exp.harmonized
gbm.exp.legacy	gbm.exp.legacy
GDCdownload	GDCdownload
GDCprepare	GDCprepare
GDCprepare_clinic	GDCprepare_clinic
GDCquery	GDCquery
GDCquery_clinic	GDCquery_clinic
GDCquery_Maf	GDCquery_Maf
geneInfo	geneInfo
geneInfoHT	geneInfoHT
GenesCutID	GenesCutID
GeneSplitRegulon	GeneSplitRegulon
getAdjacencyBiogrid	getAdjacencyBiogrid
getDataCategorySummary	getDataCategorySummary
getGDCInfo	getGDCInfo
getGDCprojects	getGDCprojects
getGistic	getGistic
getManifest	getManifest
getResults	getResults
getTSS	getTSS
ggbiplot	ggbiplot
isServeOK	isServeOK
matchedMetExp	matchedMetExp
met.gbm.27k	met.gbm.27k
msi_results	msi_results
pancan2018	pancan2018
PanCancerAtlas_subtypes	PanCancerAtlas_subtypes
TabSubtypesCol_merged	TabSubtypesCol_merged
tabSurvKMcompleteDEGs	tabSurvKMcompleteDEGs
TCGAanalyze_analyseGRN	TCGAanalyze_analyseGRN
TCGAanalyze_Clustering	TCGAanalyze_Clustering
TCGAanalyze_DEA	TCGAanalyze_DEA
TCGAanalyze_DEA_Affy	TCGAanalyze_DEA_Affy
TCGAanalyze_DMR	TCGAanalyze_DMR
TCGAanalyze_EA	TCGAanalyze_EA
TCGAanalyze_EAcomplete	TCGAanalyze_EAcomplete
TCGAanalyze_Filtering	TCGAanalyze_Filtering
TCGAanalyze_LevelTab	TCGAanalyze_LevelTab
TCGAanalyze_networkInference	TCGAanalyze_networkInference
TCGAanalyze_Normalization	TCGAanalyze_Normalization
TCGAanalyze_Pathview	TCGAanalyze_Pathview
TCGAanalyze_Preprocessing	TCGAanalyze_Preprocessing
TCGAanalyze_survival	TCGAanalyze_survival
TCGAanalyze_SurvivalKM	TCGAanalyze_SurvivalKM
TCGAbatch_Correction	TCGAbatch_Correction
TCGAbiolinks	TCGAbiolinks
TCGAprepare_Affy	TCGAprepare_Affy
TCGAquery_MatchedCoupledSampleTypes	TCGAquery_MatchedCoupledSampleTypes
TCGAquery_recount2	TCGAquery_recount2
TCGAquery_SampleTypes	TCGAquery_SampleTypes
TCGAquery_subtype	TCGAquery_subtype
TCGAtumor_purity	TCGAtumor_purity
TCGAvisualize_BarPlot	TCGAvisualize_BarPlot
TCGAvisualize_EAbarplot	TCGAvisualize_EAbarplot
TCGAvisualize_Heatmap	TCGAvisualize_Heatmap
TCGAvisualize_meanMethylation	TCGAvisualize_meanMethylation
TCGAvisualize_oncoprint	TCGAvisualize_oncoprint
TCGAvisualize_PCA	TCGAvisualize_PCA
TCGAvisualize_starburst	TCGAvisualize_starburst
TCGAvisualize_SurvivalCoxNET	TCGAvisualize_SurvivalCoxNET
TCGAVisualize_volcano	TCGAVisualize_volcano
TCGA_MolecularSubtype	TCGA_MolecularSubtype
Tumor.purity	Tumor.purity
UseRaw_afterFilter	UseRaw_afterFilter
