Package: clusterExperiment
Title: Compare Clusterings for Single-Cell Sequencing
Version: 1.4.0
Description: Provides functionality for running and comparing many
    different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
Authors@R: c(person("Elizabeth", "Purdom", email = "epurdom@stat.berkeley.edu",
            role = c("aut", "cre", "cph")),
	     person("Davide","Risso", role = "aut",email = "risso.davide@gmail.com"),
	     person("Marla", "Johnson", role = "ctb"))
Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]
Maintainer: Elizabeth Purdom <epurdom@stat.berkeley.edu>
BugReports: https://github.com/epurdom/clusterExperiment/issues
License: Artistic-2.0
Depends: R (>= 3.4), SummarizedExperiment
Imports: methods, NMF, RColorBrewer, ape, phylobase, cluster, stats,
        limma, dendextend, howmany, locfdr, matrixStats, graphics,
        parallel, RSpectra, kernlab, stringr
Suggests: BiocStyle, knitr, testthat, scRNAseq, MAST
VignetteBuilder: knitr
LazyData: false
RoxygenNote: 6.0.1
biocViews: Clustering, RNASeq, Sequencing, Software, SingleCell
Collate: 'AllChecks.R' 'AllClasses.R' 'AllGenerics.R' 'AllHelper.R'
        'AllHelperClusterFunction.R' 'JiashinJiCode.R' 'addClusters.R'
        'internalClusterFunctions.R' 'internalFunctions.R'
        'builtInClusterFunctions.R' 'clusterContrasts.R'
        'clusterLabels.R' 'clusterMany.R' 'clusterSingle.R'
        'combineMany.R' 'dataCreation.R' 'getFeatures.R' 'getParams.R'
        'mainClustering.R' 'makeBlankData.R' 'makeDendrogram.R'
        'mergeClusters.R' 'plotBarplot.R' 'plotClusters.R'
        'plotClustersWorkflow.R' 'plotContrastHeatmap.R'
        'plotDendrogram.R' 'plotDimReduce.R' 'plotHeatmap.R'
        'plottingHelpers.R' 'rsec.R' 'seqCluster.R'
        'subsampleClustering.R' 'transformFunction.R'
        'workflowClusters.R'
NeedsCompilation: no
Packaged: 2017-10-31 03:11:25 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 16:26:43 UTC; unix
