# Pathway fingerprinting for analysis of gene expression arrays

## Documentation for package ‘pathprint’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

chipframe | Probe to Entrez Gene ID mappings
consensusDistance | Calculate a distribution of distances from a consensus fingerprint
consensusFingerprint | Construct a consensus fingerprint
customCDFAnn | Map probes to Entrez Gene IDs
diffPathways | Detect differentially activated pathways between fingerprints
exprs2fingerprint | Create a pathway fingerprint from a gene expression table.
genesets | Names of genesets used in pathprint
GEO.fingerprint.matrix | Create a pathway fingerprint from a gene expression table.
GEO.metadata.matrix | Create a pathway fingerprint from a gene expression table.
Introduction to pathprint | Pathway fingerprinting for analysis of gene expression arrays
pathprint | Pathway fingerprinting for analysis of gene expression arrays
pathprint.Ce.gs | Pathprint genesets - C. elegans
pathprint.Dm.gs | Pathprint genesets - D. melanogaster
pathprint.Dr.gs | Pathprint genesets - D. rerio
pathprint.Hs.gs | Pathprint genesets - H. sapiens
pathprint.Mm.gs | Pathprint genesets - M. musculus
pathprint.Rn.gs | Pathprint genesets - R. norvegicus
platform.thresholds | Pathway fingerprint threshold values
pluripotents.frame | Manually curated list of pluripotent arrays
single.chip.enrichment | Calculate enrichment of a list of genesets in an array
thresholdFingerprint | Apply threshold values to produce a Pathway Fingerprint