# Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

## Documentation for package ‘slalom’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

slalom-package | Factorial single-cell latent variable models
addResultsToSingleCellExperiment | Add results to SingleCellExperiment object
initSlalom | Initialize a SlalomModel object
mesc | A single-cell expression dataset to demonstrate capabilities of slalom from mouse embryonic stem cells (mESCs)
newSlalomModel | Create a new SlalomModel object.
plotLoadings | Plot highest loadings of a factor
plotRelevance | Plot results of a Slalom model
plotTerms | Plot relevance for all terms
Rcpp_SlalomModel | The "Slalom Model" (Rcpp_SlalomModel) class
Rcpp_SlalomModel-class | The "Slalom Model" (Rcpp_SlalomModel) class
slalom | Factorial single-cell latent variable models
SlalomModel | SlalomModel C++ class
topTerms | Show results of a Slalom model
train | Train a SlalomModel object
train-method | Train a SlalomModel object
trainSlalom | Train a SlalomModel object
updateSlalom | Update a SlalomModel object