Package: ASSIGN
Type: Package
Title: Adaptive Signature Selection and InteGratioN (ASSIGN)
Version: 1.14.0
Date: 2014-10-30
Author: Ying Shen, Andrea H. Bild, W. Evan Johnson, and Mumtehena Rahman
Maintainer: Ying Shen <yshen3@bu.edu>, W. Evan Johnson <wej@bu.edu>,
 David Jenkins <dfj@bu.edu>, Mumtehena Rahman <moom.rahman@utah.edu>
Depends: R (>= 3.2)
Description: ASSIGN is a computational tool to evaluate the pathway
    deregulation/activation status in individual patient samples.
    ASSIGN employs a flexible Bayesian factor analysis approach
    that adapts predetermined pathway signatures derived either
    from knowledge-based literatures or from perturbation
    experiments to the cell-/tissue-specific pathway signatures.
    The deregulation/activation level of each context-specific
    pathway is quantified to a score, which represents the extent
    to which a patient sample encompasses the pathway
    deregulation/activation signature.
License: MIT + file LICENSE
LazyData: true
Imports: gplots, graphics, grDevices, msm, Rlab, stats, sva, utils,
        ggplot2
biocViews: Software, GeneExpression, Pathways, Bayesian
Suggests: testthat, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-10-31 00:47:14 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 02:58:03 UTC; windows
