BASiCS_Chain-methods {BASiCS} | R Documentation

## 'show' method for BASiCS_Chain objects

### Description

'show' method for `BASiCS_Chain` objects.

'updateObject' method for `BASiCS_Chain` objects. It is used to convert outdated `BASiCS_Chain` objects into a version that is compatible with the Bioconductor release of BASiCS. Do not use this method is `BASiCS_Chain` already contains a `parameters` slot.

### Usage

    ## S4 method for signature 'BASiCS_Chain'
    show(object)

    ## S4 method for signature 'BASiCS_Chain'
    updateObject(object, ..., verbose = FALSE)

### Arguments

`object` | A `BASiCS_Chain` object.
`...` | Additional arguments of `updateObject` generic method. Not used within BASiCS.
`verbose` | Additional argument of `updateObject` generic method. Not used within BASiCS.

### Value

Prints a summary of the properties of `object`.

Returns an updated `BASiCS_Chain` object that contains all model parameters in a single slot object (list).

### Author(s)

Catalina A. Vallejos cnvallej@uc.cl

Catalina A. Vallejos cnvallej@uc.cl

### References

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

### Examples

    Data <- makeExampleBASiCS_Data()
    Chain <- BASiCS_MCMC(Data, N = 50, Thin = 2, Burn = 2)

    # Not run
    # New_Chain <- updateObject(Old_Chain)

[Package BASiCS version 1.0.1 Index]