plot-BASiCS_Chain-method {BASiCS} | R Documentation

## 'plot' method for BASiCS_Chain objects

### Description

'plot' method for `BASiCS_Chain` objects

### Usage

    ## S4 method for signature 'BASiCS_Chain,ANY'
    plot(x, Param = "mu", Gene = NULL,
      Cell = NULL, Batch = 1, ylab = "", xlab = "", ...)

### Arguments

`x` | A `BASiCS_Chain` object.
`Param` | Name of the slot to be used for the plot. Possible values: `'mu'`, `'delta'`, `'phi'`, `'s'`, `'nu'` and `'theta'`
`Gene` | Specifies which gene is requested. Required only if `Param = 'mu'` or `'delta'`
`Cell` | Specifies which cell is requested. Required only if `Param = 'phi', 's'` or `'nu'`
`Batch` | Specifies which batch is requested. Required only if `Param = 'theta'`
`ylab` | As in `par`.
`xlab` | As in `par`.
`...` | Other graphical parameters (see `par`).

### Value

A plot object

### Author(s)

Catalina A. Vallejos cnvallej@uc.cl

### References

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

### Examples

    # See
    help(BASiCS_MCMC)

[Package BASiCS version 1.0.1 Index]