batchqc_heatmap {BatchQC} | R Documentation

## Produce heatmap plots for the given data

### Description

Produce heatmap plots for the given data

### Usage

    batchqc_heatmap(data.matrix, batch, mod = NULL, max_display = 50)

### Arguments

`data.matrix` | Given data or simulated data from rnaseq_sim()
`batch` | Batch covariate
`mod` | Model matrix for outcome of interest and other covariates besides batch
`max_display` | Maximum number of rows to display in heat map

### Value

Heatmap plots for the given data

### Examples

    nbatch <- 3
    ncond <- 2
    npercond <- 10
    data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
        npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800,
        basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
    batch <- rep(1:nbatch, each=ncond*npercond)
    condition <- rep(rep(1:ncond, each=npercond), nbatch)
    pdata <- data.frame(batch, condition)
    modmatrix = model.matrix(~as.factor(condition), data=pdata)
    batchqc_heatmap(data.matrix, batch, mod=modmatrix)

[Package BatchQC version 1.6.1 Index]