f1000_article {BiocWorkflowTools} | R Documentation

## F1000Research article format

### Description

Format for creating F1000Research software tool articles.

### Usage

    f1000_article(toc = FALSE, number_sections = FALSE, fig_width = 5.67,
      fig_height = fig_width, fig_align = "center", keep_tex = TRUE,
      citation_package = "natbib", md_extensions = "+link_attributes",
      pandoc_args = "--wrap=preserve", ...)

### Arguments

`toc` | `TRUE` to include a table of contents in the output
`number_sections` | `TRUE` to number section headings
`fig_width` | Default width (in inches) for figures
`fig_height` | Default width (in inches) for figures
`fig_align` | Default alignment of figures. Possible values are "center" (default) "left" and "right".
`keep_tex` | Keep the intermediate tex file used in the conversion to PDF
`citation_package` | The LaTeX package to process citations, `natbib` or `biblatex`. Use `none` if neither package is to be used.
`md_extensions` | Markdown extensions to be added or removed from the default definition or R Markdown. See the `rmarkdown_format` for additional details.
`pandoc_args` | Additional command line options to pass to pandoc
`...` | Arguments to `pdf_document`

### Details

Creates LaTeX sources which can be submitted to F1000Research through Overleaf.

### Value

R Markdown output format to pass to `render`

### Citations

R Markdown supports automatic generation of citations. You can find more information on the markdown citation syntax in the Bibliographies and Citations article in the R Markdown online documentation.

A bibliography file can be specified using the `bibliography` metadata field in the document's YAML header. Metadata variables for customizing citation style include:

`biblio-style`

  Bibliography style (e.g. "unsrtnat", "plainnat")

`natbiboptions`

  Options to `natbib` LaTeX package (e.g. "number", "super", "round")

`biblatexoptions`

  Options to `biblatex` LaTeX package

### Examples

    ## Not run:

    rmarkdown::draft("MyArticle.Rmd", template="f1000_article", package="BiocWorkflowTools")

    ## End(Not run)

[Package BiocWorkflowTools version 1.4.2 Index]