Package: CAGEr
Title: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing
        data for precise mapping of transcription start sites and
        promoterome mining
Version: 1.20.0
Date: 2017-10-24
Author: Vanja Haberle <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>, Charles Plessy <plessy@riken.jp>
Imports: utils, Rsamtools, GenomicRanges (>= 1.23.16), IRanges (>=
        2.5.27), data.table, beanplot, rtracklayer, som, VGAM
Depends: methods, R (>= 2.15.0), BSgenome
Suggests: BSgenome.Drerio.UCSC.danRer7, FANTOM3and4CAGE
Enhances: parallel
Description: Preprocessing of CAGE sequencing data, identification and normalization of transcription start sites and downstream analysis of transcription start sites clusters (promoters).
License: GPL-3
biocViews: Preprocessing, Sequencing, Normalization,
        FunctionalGenomics, Transcription, GeneExpression, Clustering,
        Visualization
Collate: AllClasses.R GetMethods.R ImportFunctions.R ImportMethods.R
        CorrelationMethods.R ExportFunctions.R ExportMethods.R
        MergingMethods.R NormalizationFunctions.R
        NormalizationMethods.R ExpressionProfilingMethods.R
        ClusteringFunctions.R ClusteringMethods.R
        CumulativeDistributionFunctions.R
        CumulativeDistributionMethods.R QuantileWidthFunctions.R
        QuantileWidthMethods.R AggregationFunctions.R
        AggregationMethods.R ShiftingFunctions.R ShiftingMethods.R
NeedsCompilation: no
Packaged: 2017-10-31 00:33:05 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 03:19:34 UTC; windows
