Package: CNPBayes
Type: Package
Title: Bayesian mixture models for copy number polymorphisms
Version: 1.8.0
Maintainer: Jacob Carey <jcarey15@jhu.edu>
Description: Bayesian hierarchical mixture models for batch effects and copy number.
Date: Tue Jan 20 20:41:00 EST 2015
Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey
Depends: R (>= 3.4.0), IRanges, GenomicRanges
Imports: Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer,
        gtools, combinat, GenomeInfoDb (>= 1.11.6), methods,
        BiocGenerics, graphics, stats, coda, SummarizedExperiment,
        mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr,
        tibble
Suggests: testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS
Collate: 'help.R' 'AllGenerics.R' 'AllClasses.R' 'Deprecated-classes.R'
        'RcppExports.R' 'coerce-methods.R' 'copynumber-models.R'
        'data.R' 'deprecated_functions.R' 'diagnostics.R' 'functions.R'
        'marginal_likelihood.R' 'methods-Hyperparameters.R'
        'methods-McmcChains.R' 'methods-McmcParams.R'
        'methods-MixtureModel.R' 'methods-MultiBatchModel.R'
        'methods-MultiBatchPooled.R' 'methods-SingleBatchModel.R'
        'methods-SingleBatchPooled.R' 'methods-SummarizedExperiment.R'
        'model_initialization.R' 'plot-functions.R'
        'posteriorSimulation-methods.R' 'relabeling.R'
        'simulate_data.R'
VignetteBuilder: knitr
License: Artistic-2.0
LinkingTo: Rcpp
biocViews: CopyNumberVariation, Bayesian
Roxygen: list(wrap=FALSE)
LazyData: TRUE
URL: https://github.com/scristia/CNPBayes
BugReports: https://github.com/scristia/CNPBayes/issues
NeedsCompilation: yes
RoxygenNote: 6.0.1
Packaged: 2017-10-31 01:32:09 UTC; biocbuild
Built: R 3.4.2; i386-w64-mingw32; 2017-10-31 03:44:48 UTC; windows
Archs: i386, x64
