shinyCOMPASS {COMPASS} | R Documentation

## Start a Shiny Application for Visualizing COMPASS Results

### Description

This function takes a `COMPASSResult` object, and generates a local Shiny application for visualizing the results.

### Usage

    shinyCOMPASS(x, dir = NULL, meta.vars, facet1 = "None", facet2 = "None",
      facet3 = "None",
      main = "Heatmap of Ag-Specificity Posterior Probabilities",
      stimulation = NULL, launch = TRUE, ...)

### Arguments

`x` | An object of class `COMPASSResult`.
`dir` | A location to write out the `.rds` files that will be loaded and used by the Shiny application.
`meta.vars` | A character vector of column names that should be used for potential facetting in the Shiny app. By default, we take all metadata variables; you may want to limit this if you know certain variables are not of interest.
`facet1, facet2, facet3` | Default values for facets in the Shiny app. Each should be the name of a single vector in the metadata.
`main` | A title to give to the heatmap and subset histogram plots.
`stimulation` | The name of the stimulation applied. If this is `NULL`, the stimulations used are inferred from the data (ie, the `COMPASS` call used).
`launch` | Boolean; if `TRUE` we launch the Shiny application. Otherwise, the user can launch it manually by navigating to the directory `dir` and running `shiny::runApp()`.
`...` | Optional arguments passed to `shiny::runApp`.

### See Also

`shinyCOMPASSDeps`, for identifying packages that you need in order to run the Shiny application.

### Examples

    if (interactive()) {
      oldOpt <- getOption("example.ask")
      options(example.ask=FALSE)
      on.exit( options(example.ask=oldOpt) )
      shinyCOMPASS(CR)
      options(example.ask=TRUE)
    }

[Package COMPASS version 1.16.2 Index]