38b14bac27acfcc15bcf2ae04427defe *CITATION
74e93b4b6b84eae329acba23b4825907 *DESCRIPTION
12346b410d158dcb9053b964ee23a8e2 *INDEX
a3254d32550f11963dc9aba51aac9481 *Meta/Rd.rds
f105c0e18a133eada9cac9ac5c59ab20 *Meta/data.rds
7f532e677b399de99b8ca9453103405a *Meta/features.rds
34e3e18f930922276f08a97759f0855d *Meta/hsearch.rds
e2142ceb43751bb70151aa6921bfb373 *Meta/links.rds
7be840b9e90957f090780e5b845e1b6d *Meta/nsInfo.rds
da1bb208641549e511ab68f60441b511 *Meta/package.rds
246d6eba66ad068e63ddee1895ef55dd *Meta/vignette.rds
aedf71f23db45f551253b50c2ace53ff *NAMESPACE
355ff4a5830de220318246936bda1a1a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPpeakAnno
3ad6a20031cce6d7a3fbe584565ed71f *R/ChIPpeakAnno.rdb
174d47dc76f1a0d537da3cb131bd0083 *R/ChIPpeakAnno.rdx
cd9ddac3695cc465aca76c73c97dcb09 *data/ExonPlusUtr.human.GRCh37.rda
049b19adacda685b94bfba2431392236 *data/HOT.spots.rda
8e9ecfe483bc1a3a9ddfa303eab223a5 *data/Peaks.Ste12.Replicate1.rda
ac3521f4b062658e1c513f51bce5487a *data/Peaks.Ste12.Replicate2.rda
129208051a1fe59d6eeed541cc4a0e28 *data/Peaks.Ste12.Replicate3.rda
1f72e6fdc6f424d51ef9a0a9fd47cde5 *data/TSS.human.GRCh37.rda
e8d4d3e3a91cd42adcf34ce018a65f55 *data/TSS.human.GRCh38.rda
a3adc6b31def1efc300fda0085005a5b *data/TSS.human.NCBI36.rda
0c3ef2fd321a47b9ed4d1a0ab63044ff *data/TSS.mouse.GRCm38.rda
f7a450954ac6d027fecb6780084976fb *data/TSS.mouse.NCBIM37.rda
7c615e60ca62bd77cfce469f30b28f7e *data/TSS.rat.RGSC3.4.rda
d1c0f799c823b46b4faf59a93f4f48db *data/TSS.rat.Rnor_5.0.rda
ba273cde7cce3343d816e625a393f9e2 *data/TSS.zebrafish.Zv8.rda
0b5cf3968954c7c36028169c301e5cfe *data/TSS.zebrafish.Zv9.rda
9f2f4ef11095f06779286d778e90b0f0 *data/annotatedPeak.rda
54d5fd6de4d6396e72b72670e9055c3b *data/datalist
483b9cad06866b432d5e0accb6f21e63 *data/enrichedGO.rda
91baeaa5f0b9dcd1507b22219aa41d88 *data/myPeakList.rda
1037ad6e69295171bcea7cbf40faad3a *data/wgEncodeTfbsV3.rda
8f901c1094b0f58bc06c3943cfef6d52 *doc/ChIPpeakAnno.R
ca61335bb6ea64e769d270c6790b04db *doc/ChIPpeakAnno.Rmd
a030378f883a6eec39120bcf17a59b0d *doc/ChIPpeakAnno.html
23b1866d518c4df0235309e8c5134a04 *doc/FAQs.R
d8cc96a64fe7d0962b4e57db7f0c1c98 *doc/FAQs.Rmd
dcd8a8c79fe5d8fab831a60023dd0ff0 *doc/FAQs.html
1ea2ffbb93906e2986d732d41563f996 *doc/index.html
5c0dc33e542f2da6c74333e18585f6b2 *doc/pipeline.R
9df55e21e5fe3c9c01403f85301806bf *doc/pipeline.Rmd
0caf8e49384a9190187a4f31ce8892f8 *doc/pipeline.html
0c47aaa256a83e2f7dda405d2092c2be *doc/quickStart.R
959452ada663bbe77639b3bf778e13ae *doc/quickStart.Rmd
29dd600328a22f829ad7fdfa0213521f *doc/quickStart.html
51a1074f5098d47f6e68834d05a0b052 *extdata/GFF_peaks.gff
bbd79f3bd4539df278d4d54a6a1c5b20 *extdata/GSM700906_AA86_vs_INPUT_WS170.bed
147f05d83bd1affe323c3166757e6d7f *extdata/GSM700907_DAF-12_TAP_vs_INPUT_#1_WS170.bed
622ff4061df9df9f9462f1fab72a63bd *extdata/GSM700908_DAF-12_TAP_vs_INPUT_#2_WS170.bed
70e0739a061fdcfdc7183e1cfd6b35a3 *extdata/GSM700909_DAF-12_TAP_vs_INPUT_#3_WS170.bed
070927932b507d9363c00f191c2a8c1f *extdata/MACS2_peaks.xls
3ba1b6678961b0d259ace72a677725ef *extdata/MACS_output.bed
c198dabb98b6a234cc5dedf2257eb76e *extdata/MACS_peaks.xls
ca1579eeffe79266a6a6d67285d06134 *extdata/TAF.bigWig
5c1ddb53e950aa7cee0c3d60f4b795c6 *extdata/TAF.broadPeak
405b734ee40b942b975426a8bb7a5905 *extdata/Tead4.bigWig
c519323cc98c34ce499847e01b126067 *extdata/Tead4.broadPeak
abf55e5af87269799387b8e534e54f2c *extdata/WS220.bed
9aa17877afeab3521a50d4be9a5afd8a *extdata/YY1.bigWig
3f580886a46268c7acb09d10cd49e0c8 *extdata/YY1.broadPeak
ed4e456fedcc44366e32b10701f8afb7 *extdata/annotatedPeaks.2.10.0.rds
20e9bb1fe398ccd866238d08461904ab *extdata/cvglist.rds
68ced04855781f8e713bbe6e579c20a3 *extdata/examplePattern.fa
37c4a0a35b151b8d32a1daee391c47a9 *extdata/gadem.rda
35fc20f4e80afc69c814b0548c1be2b6 *extdata/guide-seq-peaks.txt
07cb1ce6d32a969cf6d5fda3b5492559 *extdata/peaks.narrowPeak
c2b7832fbd74395028b2e09c880e5bf3 *extdata/peaks_hg19.bed
9cae92f469e5acdf71a6195ee3de7479 *extdata/ref.gtf
9d5062a07d7c3e9db2e515494f35487c *extdata/test.bed
84aec8ea2e86a9110d6b5a25d2078c5f *extdata/wgEncodeUmassDekker5CGm12878PkV2.bed.gz
9ed847f674315604026384f1d63b13a6 *help/AnIndex
12157f1db29121cb99b94564322c54cf *help/ChIPpeakAnno.rdb
2c2f7e7558d71a8408bac92926e9ad35 *help/ChIPpeakAnno.rdx
f46a093289b91e9181aaf5f7a23abef9 *help/aliases.rds
9963e367e7bd291db285079f59a68ab1 *help/paths.rds
29f9133d24bf1e722631393bdca1747d *html/00Index.html
370d6984dd4e673e76c2a396f3a9fa68 *html/BED2RangedData.html
187042cf01a4cf59aa2b2f61a1a32c49 *html/ChIPpeakAnno-deprecated.html
c0ddb5758b0b0c1590c08f242a2551d3 *html/ChIPpeakAnno-package.html
26af6f735d681e67e0c2096ed8776c86 *html/ExonPlusUtr.human.GRCh37.html
cfa0a27f4d2d2e744a1b312788ed5595 *html/GFF2RangedData.html
30ab5672cb6c38db044e12f45e2e969f *html/HOT.spots.html
3847b6609b79a8be2a903cfca3130682 *html/IDRfilter.html
d30b8f93f1fd635bab724f7067c2f87f *html/Peaks.Ste12.Replicate1.html
694698dbdca44e61b5c4d8d5db5f53b2 *html/Peaks.Ste12.Replicate2.html
89ee2267536f3d7d71f5b988ff132368 *html/Peaks.Ste12.Replicate3.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
76a1da4e90f2aa25c708bf64f4f2a413 *html/TSS.human.GRCh37.html
f218b6f6dbd8e4dba0fdabef509ef0d8 *html/TSS.human.GRCh38.html
7986f904f15290d285372dc7b20e1c9b *html/TSS.human.NCBI36.html
d30762e8a908096c061ef0f48d2b036c *html/TSS.mouse.GRCm38.html
c4eb4748579c90ffd93df30ae3ebd231 *html/TSS.mouse.NCBIM37.html
bec2c200ea2f17485ce3c1e491c4dbcb *html/TSS.rat.RGSC3.4.html
39e573951ad5fedfa090027e9a1f9c78 *html/TSS.rat.Rnor_5.0.html
083d8353108921ba087175b6a30b5721 *html/TSS.zebrafish.Zv8.html
0ad0f12ab2a983801c19ee7bd75a0c6f *html/TSS.zebrafish.Zv9.html
b5161e262c47cba9625ee0c360938fb9 *html/addAncestors.html
5e955fbb6e4b86c78dcd835b3d3108a2 *html/addGeneIDs.html
16f810d2ff16bdac0f6382acd25a1120 *html/addMetadata.html
16b1dc620b0aaee808ccf39b8ca6b52b *html/annoGR.html
cbed60b9a7b27431028cdd2377def693 *html/annoPeaks.html
6cf2beb7c03fb3011645e94e777343cd *html/annotatePeakInBatch.html
bece823f9be7f4c93a2932e3fa18292a *html/annotatedPeak.html
cd4d0cb5c0e64a42ed6bc0b5502300b4 *html/assignChromosomeRegion.html
e241ef220979a78df7c5f9e4d780bc07 *html/bdp.html
e4162380c1f866e35ccc130fe1fd8d1a *html/binOverFeature.html
7d58985d4062832223c8062aa32a7b16 *html/binOverGene.html
ecc788677e1e276810c186475cc1d262 *html/binOverRegions.html
685732ccee532c48f5889a3cc6f84eda *html/bindist.html
81e44ae0fde567ce10bf4679b6671923 *html/condenseMatrixByColnames.html
d7ae67d7c0e4e89a791b812b6c8f224a *html/convert2EntrezID.html
cd9e1c87e698d706485f4bf2490a254e *html/countPatternInSeqs.html
ca9661b57ddc841fa73ef790eedf997c *html/cumulativePercentage.html
ddd998e65237b32b0cf2cb53ec7ff4d6 *html/egOrgMap.html
8a52f1e2d7304efc784980be81b7193d *html/enrichedGO.html
c302c2581b1caf036e8d8d4132b829e1 *html/estFragmentLength.html
dcbe2203295b7e19794fd1b7ae602ca8 *html/estLibSize.html
a2ce1db3d3e605afeff453018305c7d9 *html/featureAlignedDistribution.html
ae81d99f433dcc45db6977f9ad09ed20 *html/featureAlignedExtentSignal.html
9cb3ea2e7b685b7a03e168d82a7d2a36 *html/featureAlignedHeatmap.html
f4ff2afa83c578635be4801c3a06c993 *html/featureAlignedSignal.html
dda1d07cb5422c1840283753621077c9 *html/findEnhancers.html
feb7e76200623a308e7a3706c9e6dd9a *html/findOverlappingPeaks.html
062a061084c8220bec14f8ec167e79d4 *html/findOverlapsOfPeaks.html
ab5ed1749c39b97a070f80e14be24ea9 *html/findVennCounts.html
192fb806fa641af7ba923b4bddd40c74 *html/getAllPeakSequence.html
c1289d73b2f76b78b60dc9c1c994c1df *html/getAnnotation.html
ada67197c57cc9a9b3e7d6e815e171ee *html/getEnrichedGO.html
ca4bb71affd168099b98689defdfcaf3 *html/getEnrichedPATH.html
b8a88abfe2ed980d11da8bc5e0522fb5 *html/getGeneSeq.html
5277e46841eb21fb00d28a73809a6ee5 *html/getUniqueGOidCount.html
1d69179282b637d356f211206b6212d4 *html/getVennCounts.html
ab37b8932d4f9336c8f58fd4da830e34 *html/hyperGtest.html
f894ee432c898e3e2f8cd4ede0ba20ea *html/makeVennDiagram.html
2d2137a1463896136324deefaca815c0 *html/mergePlusMinusPeaks.html
075fd517b5d7d99ca85fb44548acf332 *html/myPeakList.html
a07373038321cc308efe15ebc2f3f97e *html/oligoFrequency.html
45fbf77e6d3f3e5ee56fb4a0fd5a723f *html/oligoSummary.html
5852e57e397f60b61d1e575f1299b738 *html/peakPermTest.html
55b84e7a58b60d594b89f5b7409c809b *html/peaksNearBDP.html
4eb00c66e79b4e8f9cb039bd5549bf62 *html/permPool.html
4dc864daaffefcfaa4daef2a80b76bbe *html/pie1.html
be9b77e0dc8695050e266bd7e95154d2 *html/plotBinOverRegions.html
4fa3c35cd77c138ace4e170dc7cfc8cf *html/preparePool.html
f4440fb414d2d0ba610626e142ceea4e *html/reCenterPeaks.html
d1f714819b01ae85d4db5252dafdc3b3 *html/summarizeOverlapsByBins.html
bb2c38636da432d7e23f38fa94b6eecc *html/summarizePatternInPeaks.html
9f2bafe9753279447b76304c53d457f0 *html/tileCount.html
3d928d37c77e6de308260b6a82e5f29b *html/tileGRanges.html
88656707296f9fee56de4712ef683473 *html/toGRanges.html
c96b4397294f589f005ce279c591e781 *html/translatePattern.html
86b13b68cd0caeabe3924920c0d79d08 *html/wgEncodeTfbsV3.html
42fbdb1ecce41d23d99bec2a928a2df8 *html/write2FASTA.html
dbfaf687b597fb3b2a3b989e8d0d2598 *html/xget.html
