# Judging Quality of Clustering Methods using Mutual Information

## Documentation for package ‘ClusterJudge’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ClusterJudge-package | Judging Quality of Clustering Methods using Mutual Information
attribute_mut_inf | calculates the mutual information between each attribute of the entity.attribute pairs
ClusterJudge | Judging Quality of Clustering Methods using Mutual Information
clusterJudge | judges clustering using an entity.attribute table
clusterJudge_z_score | calculates the 'cluster judge' z-score
consolidate_entity_attribute | removes the redundant attributes based on the mutual information between attributes
convert_Yeast_SGDId_2_systematic | converts the SGD Gene Id into the systematic name of the gene
download_Yeast_GO_mapping | downloads the Gene Ontology attributes mapped to Yeast genes
download_Yeast_Go_terms | downloads the description of Gene Ontology attributes
entities_attribute_stats | presents basic statistics on the number of entities per attribute
mi.GO.Yeast | precalculated mutual information between Gene Ontology attributes of Yeast genes
validate_association | validates the associations between entities and attributes
Yeast.GO.assocs | Gene Ontology attributes associated to Yeast Gene entities