Package: DChIPRep
Title: DChIPRep - Analysis of chromatin modification ChIP-Seq data with
        replication
Version: 1.8.0
Authors@R: c(person("Bernd", "Klaus", email = "bernd.klaus@embl.de",
        role = c("aut", "cre")), 
        person("Christophe", "Chabbert", email
        = "christophe.chabbert@embl.de", role = "aut"), 
        person("Sebastian", "Gibb", role="ctb",
        email="mail@sebastiangibb.de"))
Description: The DChIPRep package implements a methodology to assess
    differences between chromatin modification profiles in
    replicated ChIP-Seq studies as described in Chabbert et. al -
    http://www.dx.doi.org/10.15252/msb.20145776. A detailed description of 
    the method is given in the software paper at https://doi.org/10.7717/peerj.1981
Depends: R (>= 3.4), DESeq2
Imports: methods, stats, utils, ggplot2, fdrtool, reshape2,
        GenomicRanges, SummarizedExperiment, smoothmest, plyr, tidyr,
        assertthat, S4Vectors, purrr, soGGi, ChIPpeakAnno
License: MIT + file LICENCE
LazyData: true
Suggests: mgcv, testthat, BiocStyle, knitr, rmarkdown
Collate: 'AllClasses.R' 'AllGenerics.R' 'DChipRep.R' 'dataImport.R'
        'dataImportsoGGi.R' 'documentData.R' 'methods.R'
        'plottingFunctions.R' 'runTesting.R'
VignetteBuilder: knitr
biocViews: Sequencing, ChIPSeq, WholeGenome
SystemRequirements: Python 2.7, HTSeq (>= 0.6.1), numpy, argparse, sys
NeedsCompilation: no
Author: Bernd Klaus [aut, cre], Christophe Chabbert [aut], Sebastian Gibb [ctb]
Maintainer: Bernd Klaus <bernd.klaus@embl.de>
RoxygenNote: 6.0.1
Packaged: 2017-10-31 01:28:01 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 04:05:25 UTC; windows
