Package: ELMER
Title: Inferring Regulatory Element Landscapes and Transcription Factor
        Networks Using Cancer Methylomes
Version: 2.2.7
Author: c(person("Lijing", "Yao", role = "aut", email = "lijingya@usc.edu"),
		       person("Ben", "Berman", role = "aut"),
		       person("Peggy", "Farnham", role = "aut"),
		       person("Hui", "Shen", role = "ctb"),
		       person("Peter", "Laird", role = "ctb"),
		       person("Simon","Coetzee", role = c("cre","ctb"), email = "Simon.Coetzee@cshs.org"),
		       person("Tiago","Chedraoui Silva", role = c("aut")))
Maintainer: Tiago Chedraoui Silva <tiagochst@usp.br>
Description: ELMER is designed to use DNA methylation and gene expression from a
    large number of samples to infere regulatory element landscape and transcription
    factor network in primary tissue.
Depends: R (>= 3.4.0), ELMER.data
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Imports: GenomicRanges, ggplot2, reshape, grid, grDevices, graphics,
        methods, parallel, stats, utils, IRanges, GenomeInfoDb,
        S4Vectors, GenomicFeatures, TCGAbiolinks (>= 2.5.5), plyr,
        Matrix, dplyr, Gviz, ComplexHeatmap, circlize,
        MultiAssayExperiment, SummarizedExperiment, biomaRt,
        doParallel, downloader, ggrepel, lattice, magrittr, readr,
        rvest, xml2, plotly, gridExtra
Suggests: BiocStyle, knitr, testthat, DT, GenomicInteractions, webshot,
        rtracklayer, covr
biocViews: DNAMethylation, GeneExpression, MotifAnnotation, Software,
        GeneRegulation, Transcription, Network
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-12-27 02:03:22 UTC; biocbuild
Built: R 3.4.3; ; 2017-12-27 04:49:42 UTC; windows
