geneViz_formatCDS {GenVisR} | R Documentation

## format cds

### Description

given a Granges object specifying a region of interest, format into a form recognizable by ggplot2

### Usage

    geneViz_formatCDS(txdb = NULL, gr = NULL, genome = NULL, reduce = FALSE)

### Arguments

`txdb` | A TxDb object for a genome
`gr` | A Granges object to format
`genome` | Object of class BSgenome specifying the genome for GC content calculation
`reduce` | Boolean specifying whether to collapse isoforms in the Granges object ROI

### Value

Object of class data frame

[Package GenVisR version 1.8.1 Index]