cnView_qual {GenVisR} | R Documentation

## check input to cnView

### Description

Perform a data quality check for inputs to cnView

### Usage

    cnView_qual(x, y, z, genome, CNscale)

### Arguments

`x` | a data frame with columns chromosome, coordinate, cn
`y` | a data frame with columns "chrom", "chromStart", "chromEnd", "name", "gieStain"
`z` | a data frame with columns chromosome, start, end , segmean
`genome` | character string specifying UCSC genome to use
`CNscale` | Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute"

### Value

a list of data frames passing quality checks

[Package GenVisR version 1.8.1 Index]