lohSpec_tileCalc {GenVisR} | R Documentation

## Calculate loh difference

### Description

Obtain LOH on an entire chromsomes from samples in a cohort

### Usage

    lohSpec_tileCalc(window_data, normal)

### Arguments

`window_data` | object of class data frame with columns "chromosome", "position", "n_vaf", "t_vaf", "sample", "bin", "window_start", "window_stop"
`normal` | integer specifying the subtraction value from tumor VAF

### Value

object of class dataframe containing mean LOH difference calculations and column names "window_start", "window_stop", "chromosome", "position", "n_vaf", "t_vaf", "sample", "loh_diff"

[Package GenVisR version 1.8.1 Index]