compIdent_bamRcnt_qual {GenVisR} | R Documentation

## Count nucleotide reads at SNP locations

### Description

Given the bam file path, count the number of reads at the 24 SNP locations

### Usage

    compIdent_bamRcnt_qual(genome, targetbed)

### Arguments

`genome` | Object of class BSgenome corresponding to a genome of interest
`targetbed` | Object of class data frame containing target locations in .bed format

### Value

list of data objects passing quality checks

[Package GenVisR version 1.8.1 Index]