waterfall_hierarchyTRV {GenVisR} | R Documentation

## Hiearchical removal of MAF entries

### Description

Remove MAF entries with the same gene/sample in an ordered fashion such that the most deleterious are retained

### Usage

    waterfall_hierarchyTRV(x, file_type, variant_class_order)

### Arguments

`x` | a data frame in long format with columns sample, gene, trv_type
`file_type` | The type of file to act on one of 'MAF", "MGI", "Custom"
`variant_class_order` | character vector giving the hierarchical order of mutation types to plot

### Value

a data frame with multiple mutations in the same sample/gene collapsed on the most deleterious

[Package GenVisR version 1.8.1 Index]