lohSpec_tileWindow {GenVisR} | R Documentation

## Obtain LOH data

### Description

Obtain LOH heatmap on entire chromsomes from samples in a cohort

### Usage

    lohSpec_tileWindow(loh_data, window_size, normal)

### Arguments

`loh_data` | data frame with columns "chromosome", "position", "n_vaf", "t_vaf", "sample" giving raw vaf calls for germline variants
`window_size` | integer with the size of the sliding window (bp) to be applied
`normal` | integer specifying the normal VAF frequency used in LOH calculations

### Value

object of class dataframe containing LOH data

[Package GenVisR version 1.8.1 Index]