cnSpec_qual {GenVisR} | R Documentation

## Construct CN cohort plot

### Description

given a data frame construct a plot to display CN information for a group of samples

### Usage

    cnSpec_qual(x, y, genome, CNscale)

### Arguments

`x` | object of class data frame containing columns chromosome, start, stop, segmean, sample
`y` | object of class data frame containing user supplied chromosome locations
`genome` | character string specifying a user supplied genome
`CNscale` | Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute"

### Value

character string specifying input passed quality check

[Package GenVisR version 1.8.1 Index]