# Integrative analysis of Multi-omics data for Alternative Splicing

## Documentation for package ‘IMAS’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

IMAS-package | 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing
ASvisualization | Visualize the results of the ASdb object.
Clinical.data | A data frame for clinical data
ClinicAnalysis | Analysis for differential clinical outcomes across PSI values
CompGroupAlt | Identify alternatively spliced exons with a differential PSIs between the groups
ExonsCluster | Construct representative Exons
GroupSam | Group of each sample.
IMAS | 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing
MEsQTLFinder | Identify methylation loci that are significantly associated with alternatively spliced exons
RatioFromReads | Calculate expression ratio (PSI) from bamfiles
samplebamfiles | A data frame for example expression bam files.
sampleMedata | Methylation level data
sampleMelocus | Genomic locus of methylations
samplesnp | Genotype data
samplesnplocus | Genomic locus of SNPs
SplicingReads | Count a junction and paired-end reads