Package: IntEREst
Title: Intron-Exon Retention Estimator
Version: 1.2.2
Date: 2016-12-15
Author: Ali Oghabian <Ali.Oghabian@Helsinki.Fi>, Dario Greco
        <dario.greco@helsinki.fi>, Mikko Frilander
        <Mikko.Frilander@helsinki.fi>
Maintainer: Ali Oghabian <Ali.Oghabian@Helsinki.Fi>, Mikko Frilander
 <Mikko.Frilander@helsinki.fi>
Description: This package performs Intron-Exon Retention analysis on
        RNA-seq data (.bam files).
Depends: R (>= 3.4), GenomicRanges, Rsamtools, SummarizedExperiment,
        edgeR, S4Vectors
Imports: seqLogo, Biostrings, GenomicFeatures, IRanges, seqinr,
        graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL,
        GenomicAlignments, BiocParallel, BiocGenerics, DEXSeq, DESeq2
Suggests: clinfun, knitr, BSgenome.Hsapiens.UCSC.hg19
VignetteBuilder: knitr
LazyData: true
biocViews: Software, AlternativeSplicing, Coverage,
        DifferentialSplicing, Sequencing, RNASeq, Alignment,
        Normalization, DifferentialExpression
License: GPL-2
NeedsCompilation: no
Packaged: 2018-02-09 02:42:11 UTC; biocbuild
Built: R 3.4.3; ; 2018-02-09 06:00:06 UTC; windows
