Package: IntramiRExploreR
Title: Predicting Targets for Drosophila Intragenic miRNAs
Version: 1.0.0
Author: Surajit Bhattacharya and Daniel Cox
Maintainer: Surajit Bhattacharya <sbhattacharya3@student.gsu.edu>
Description: Intra-miR-ExploreR, an integrative miRNA target prediction
        bioinformatics tool, identifies targets combining expression
        and biophysical interactions of a given microRNA (miR). Using
        the tool, we have identified targets for 92 intragenic miRs in
        D. melanogaster, using available microarray expression data,
        from Affymetrix 1 and Affymetrix2 microarray array platforms,
        providing a global perspective of intragenic miR targets in
        Drosophila. Predicted targets are grouped according to
        biological functions using the DAVID Gene Ontology tool and are
        ranked based on a biologically relevant scoring system,
        enabling the user to identify functionally relevant targets for
        a given miR.
Depends: R (>= 3.4)
Imports: igraph (>= 1.0.1), FGNet (>= 3.0.7), knitr (>= 1.12.3), stats,
        utils, grDevices, graphics
Suggests: RDAVIDWebService, gProfileR, topGO, KEGGprofile,
        org.Dm.eg.db, rmarkdown, testthat
VignetteBuilder: knitr
License: GPL-2
biocViews: Software, Microarray, GeneTarget, StatisticalMethod,
        GeneExpression, GenePrediction
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
URL: https://github.com/sbhattacharya3/IntramiRExploreR/
BugReports: https://github.com/sbhattacharya3/IntramiRExploreR/issues
NeedsCompilation: no
Packaged: 2017-10-31 02:12:46 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 05:41:00 UTC; windows
