Package: LowMACA
Type: Package
Title: LowMACA - Low frequency Mutation Analysis via Consensus
        Alignment
Version: 1.10.0
Date: 2015-04-29
Author: Stefano de Pretis , Giorgio Melloni
Maintainer: Stefano de Pretis <ste.depo@gmail.com>, Giorgio Melloni <melloni.giorgio@gmail.com>
Description: The LowMACA package is a simple suite of tools to investigate and analyze the mutation profile of several proteins or pfam domains via consensus alignment. You can conduct an hypothesis driven exploratory analysis using our package simply providing a set of genes or pfam domains of your interest.
License: GPL-3
Depends: R (>= 2.10)
Imports: cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer,
        methods, LowMACAAnnotation, BiocParallel, motifStack,
        Biostrings
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: SomaticMutation, SequenceMatching, WholeGenome, Sequencing,
        Alignment, DataImport, MultipleSequenceAlignment
SystemRequirements: clustalo, gs, perl
NeedsCompilation: no
Packaged: 2017-10-31 01:17:38 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 05:54:40 UTC; windows
