Package: MAST
Type: Package
Title: Model-based Analysis of Single Cell Transcriptomics
Version: 1.4.1
Date: 2017-09-25
Authors@R: c(person("Andrew", "McDavid", email = "Andrew_McDavid@urmc.rochester.edu", role = c("aut", "cre")),
            person("Greg", "Finak", email="gfinak@fredhutch.org", role='aut'),
            person("Masanao", "Yajima", email="myajima@fredhutch.org", role='aut'))
VignetteBuilder: knitr
Imports: Biobase, BiocGenerics, S4Vectors, data.table, ggplot2, plyr,
        stringr, abind, methods, parallel, reshape2, stats, stats4,
        graphics, utils
Depends: SummarizedExperiment(>= 1.5.3), R(>= 3.4)
Suggests: knitr, rmarkdown, testthat, lme4(>= 1.0), roxygen2(> 4.0.0),
        numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
        TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
        BiocStyle
Description: Methods and models for handling zero-inflated single cell
    assay data.
License: GPL(>= 2)
Collate: 'AllGenerics.R' 'AllClasses.R' 'Fluidigm-methods.R'
        'GSEA-by-boot.R' 'Hypothesis.R' 'LmWrapper.R'
        'MultidimensionalScaling.R' 'RNASeqAssay-methods.R' 'Readers.R'
        'SingleCellAssay-methods.R' 'UtilityFunctions.R'
        'ZlmFit-bootstrap.R' 'ZlmFit-logFC.R' 'ZlmFit.R' 'bayesglm.R'
        'convertMASTClassic.R' 'ebayes-helpers.R' 'filterEval.R'
        'helper-methods.R' 'lmWrapper-bayesglm.R' 'lmWrapper-glm.R'
        'lmWrapper-glmer.R' 'lmWrapper-ridge.R' 'lrtest.R' 'predict.R'
        'stat_ell.R' 'thresholdSCRNA.R' 'zeroinf.R' 'zlmHooks.R'
RoxygenNote: 6.0.1
LazyData: true
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        RNASeq, Transcriptomics, SingleCell
BugReports: https://github.com/RGLab/MAST/issues
URL: https://github.com/RGLab/MAST/
NeedsCompilation: no
Packaged: 2017-12-23 02:39:54 UTC; biocbuild
Author: Andrew McDavid [aut, cre],
  Greg Finak [aut],
  Masanao Yajima [aut]
Maintainer: Andrew McDavid <Andrew_McDavid@urmc.rochester.edu>
Built: R 3.4.3; ; 2017-12-23 06:23:07 UTC; windows
