plot.thresholdSCRNACountMatrix {MAST} | R Documentation

## Plot cutpoints and densities for thresholding

### Description

Plot cutpoints and densities for thresholding

### Usage

    ## S3 method for class 'thresholdSCRNACountMatrix'
    plot(x, ask = FALSE, wait.time = 0,
      type = "bin", indices = NULL, ...)

### Arguments

`x` | output of `thresholdSCRNACountMatrix`
`ask` | if TRUE then will prompt before displaying each plot
`wait.time` | pause (in seconds) between each plot
`type` | one or more of the following: 'bin' (plot the genes by the binning used for thresholding), or 'gene' (plot thresholding by gene – see next argument)
`indices` | if `type` is equal to 'gene', and is a integer of length 1, then a random sample of `indices` genes is taken. If it is NULL, then 10 genes are sampled. If it is a integer vector of length > 1, then it is interpreted as giving a list of indices of genes to be displayed.
`...` | further arguments passed to `plot`

### Value

displays plots

### Examples

    ## See thresholdSCRNACountMatrix
    example(thresholdSCRNACountMatrix)

[Package MAST version 1.4.1 Index]