Package: MEAL
Title: Perform methylation analysis
Version: 1.8.0
Authors@R: c(person("Carlos", "Ruiz-Arenas", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Description: Package to integrate methylation and expression data. It can
    also perform methylation or expression analysis alone. Several plotting
    functionalities are included as well as a new region analysis based on
    redundancy analysis. Effect of SNPs on a region can also be estimated.
Depends: R (>= 3.2.0), Biobase, MultiDataSet
License: Artistic-2.0
biocViews: DNAMethylation, Microarray, Software, WholeGenome
LazyData: true
Imports: GenomicRanges, SNPassoc, limma, DMRcate, snpStats, vegan,
        BiocGenerics, minfi, IRanges, S4Vectors, methods, doParallel,
        parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva,
        SummarizedExperiment, SmartSVA, graphics, stats, utils,
        matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
        BiocStyle, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-10-31 01:51:11 UTC; biocbuild
Author: Carlos Ruiz-Arenas [aut, cre],
  Juan R. Gonzalez [aut]
Maintainer: Carlos Ruiz-Arenas <carlos.ruiz@isglobal.org>
Built: R 3.4.2; ; 2017-10-31 06:03:16 UTC; windows
