getZ {MIMOSA} | R Documentation

## Extract the posterior probabilities of response from a MIMOSA model

### Description

Extract the posterior probabilities of response from a MIMOSA model

Extract the component weights from a MIMOSA model

### Usage

    getZ(x)

    ## S3 method for class 'MIMOSAResultList'
    getZ(x)

    ## S3 method for class 'MIMOSAResult'
    getZ(x)

    getW(x)

    ## S3 method for class 'MIMOSAResultList'
    getW(x)

    ## S3 method for class 'MIMOSAResult'
    getW(x)

### Arguments

`x` | output from a MIMOSA model

### Value

a `matrix` of posterior probabilities

a `vector` of component weights

### Examples

    data(ICS)
    E<-ConstructMIMOSAExpressionSet(ICS,
      reference=ANTIGEN%in%'negctrl',measure.columns=c('CYTNUM','NSUB'),
      other.annotations=c('CYTOKINE','TCELLSUBSET','ANTIGEN','UID'),
      default.cast.formula=component~UID+ANTIGEN+CYTOKINE+TCELLSUBSET,
      .variables=.(TCELLSUBSET,CYTOKINE,UID),
      featureCols=1,ref.append.replace='_REF')

    result<-MIMOSA(NSUB+CYTNUM~UID+TCELLSUBSET+CYTOKINE|ANTIGEN,
        data=E, method='EM',
        subset=RefTreat%in%'Treatment'&ANTIGEN%in%'ENV',
        ref=ANTIGEN%in%'ENV'&RefTreat%in%'Reference')
        getZ(result)
    data(ICS)
    E<-ConstructMIMOSAExpressionSet(ICS,
      reference=ANTIGEN%in%'negctrl',measure.columns=c('CYTNUM','NSUB'),
      other.annotations=c('CYTOKINE','TCELLSUBSET','ANTIGEN','UID'),
      default.cast.formula=component~UID+ANTIGEN+CYTOKINE+TCELLSUBSET,
      .variables=.(TCELLSUBSET,CYTOKINE,UID),
      featureCols=1,ref.append.replace='_REF')

    result<-MIMOSA(NSUB+CYTNUM~UID+TCELLSUBSET+CYTOKINE|ANTIGEN,
        data=E, method='EM',
        subset=RefTreat%in%'Treatment'&ANTIGEN%in%'ENV',
        ref=ANTIGEN%in%'ENV'&RefTreat%in%'Reference')
    getW(result)

[Package MIMOSA version 1.16.1 Index]