mutation_types {MutationalPatterns} | R Documentation

## This function has been renamed. Use 'mut_type' instead.

### Description

This function has been renamed. Use 'mut_type' instead.

### Usage

    mutation_types(vcf)

### Arguments

`vcf` | A GRanges object.

### Value

Character vector with base substitution types

### See Also

`read_vcfs_as_granges` `mut_type`

### Examples

    ## See the 'read_vcfs_as_granges()' example for how we obtained the
    ## following data:
    vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
                    package="MutationalPatterns"))

    mut_type(vcfs[[1]])

[Package MutationalPatterns version 1.4.3 Index]