7bce1225f2c8e97ccfb3f46ef18ea52c *DESCRIPTION
627b6c16b37a59353cf4b21b802843a6 *INDEX
3e1871e6f02699e0c10a40168bc35250 *LICENSE
83e7f435f2268b1f9232dcf3a4a108e8 *Meta/Rd.rds
a46f1debdc1f45796be2b2a0e6b3b378 *Meta/features.rds
2a1c77ba33dfbcc6c069ee4318dfdab4 *Meta/hsearch.rds
6b3a332dc77b923f88f3f17b65692816 *Meta/links.rds
14b5218d1201c26ef85022f31f26d640 *Meta/nsInfo.rds
36ee53f72dd17f27af25798150c7ff44 *Meta/package.rds
f6e1ec860f12d1b3563833dd8d44b3e9 *Meta/vignette.rds
51fb55258b68fa972e858e0499797e0b *NAMESPACE
d645186e928e9e91af4553ce79293822 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Rsamtools
bb5ea049823d25442f2422ed01d18a07 *R/Rsamtools.rdb
cbac37786bc046cf2551d558250a3dda *R/Rsamtools.rdx
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22323232ba2f824ac8db07672145f03d *extdata/ce2dict1.fa
25a019557bb5685d766ed61dc4603a74 *extdata/ce2dict1.fa.fai
7df758adaaf5b6d487ac22e4dba6c31e *extdata/ex1.bam
1888862b9d22ddb8ca663eabc41c78f0 *extdata/ex1.bam.bai
be9391b9eb67b71c52b8b62aa8729b8e *extdata/ex1.bcf
db1d9a70089ed6a746574898cfbc450a *extdata/ex1.bcf.bci
96db184679450f1ff65e95a5a6712d27 *extdata/ex1.sam
f9a7ff6f4b559b5d332e19a30c3f86b0 *extdata/example.gtf.gz
5d8c67b81c8cc21846c6afae879ca705 *extdata/example.gtf.gz.tbi
e52ca02ef4d8de2f1f15b1ac0fa65005 *extdata/example_from_SAM_Spec.bam
c64f2c6168c6aba12b5c82e7dfa74afe *extdata/example_from_SAM_Spec.bam.bai
9d18ffdc11a18e91d5c64b718602c1ac *extdata/example_from_SAM_Spec.sam
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cd09b7d1c482dd798d5ab0b2d411b84d *extdata/no_which_whole_file.bam
b71d4d4736e1071a49190edb922ae5ff *extdata/no_which_whole_file.bam.bai
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1da9e8b047ed977ccb5de772b2462696 *extdata/olaps.Rda
715c47c0662b143147324b27bb854dc9 *extdata/pileup.txt
5494fd19934144f67d2a85b4ab89bcd4 *extdata/querybins.bam
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6f871a9c2a93270190defcd22f31cd64 *extdata/querybins.sam
6ddaf935be46e75ca0a88e62fa1093c2 *extdata/revbins.bam
da8444454b8554ca98d7c6e31d0a6f1b *extdata/revbins.bam.bai
c76ac123d3bd572758ff49d8f1ef0303 *extdata/revbins.sam
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23294b7cc9de134693fe56665ad54ca9 *extdata/slxMaq09_urls.txt
5ab7017a87bd6ba99c768a9155f1d8f6 *extdata/tagfilter.bam
5e643f92d1e20fffae85d626be5b0d95 *extdata/tagfilter.bam.bai
e923e5eab408e6617e72226c7875b974 *extdata/tagfilter.sam
120ab4b3e5c957a44ce695f09af76618 *extdata/tiny.bam
b99c7ee3f818e3ad21ab80198ab09e55 *extdata/tiny.bam.bai
7aee88510e5c4378a271285877a21c66 *extdata/tiny.sam
ce71aff63ec52a72d26cadef6341e0ac *extdata/tophat/README
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4ece538c2a4c0dc91de5e9967b97fd8a *extdata/tophat/junctions.bed
1712566051aaef80c6f90cd37ec2f162 *help/AnIndex
6c8974ad8164a7d3371470e4de581e35 *help/Rsamtools.rdb
1b38dcbac4a54a4746edb214ff9fcdae *help/Rsamtools.rdx
dad2db5f948c326654a09e4ff0f67449 *help/aliases.rds
cae8d1b046ed13f3479c4ad44279c9ff *help/paths.rds
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8c34076c94c909d83c2cb1f35d88ba48 *libs/x64/Rsamtools.dll
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7c89145d838d01d56ea7f705a5517a7a *scripts/features.R
76f503c5cf3165c198c9b71a2a0260f9 *scripts/remote_test.R
0bf0afc1ae9722c9554c6f6dbd8999f7 *scripts/update-samtools.sh
7b8ce960ff8555ae68a9c51007e1542c *unitTests/cases/ex1.sam.gz
7df758adaaf5b6d487ac22e4dba6c31e *unitTests/cases/ex1_noindex.bam
6a5958f08f38d0ec9edaa102fdef65d3 *unitTests/cases/ex1_shuf1000.bam
7c1ac84cf8c553c0503ac44ec535ef39 *unitTests/cases/ex1_shuf1000.bam.bai
0dd5eed996f57fa6cabc6e61912b7f6d *unitTests/cases/ex1_unsort.bam
d41d8cd98f00b204e9800998ecf8427e *unitTests/cases/ex1_zero_index.bam.bai
556492a4e08d4952bf5eef892330500d *unitTests/cases/no_SAMPLE_header.vcf
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289a01b62bdccc1ffb49c73473e3f610 *unitTests/test_bam_header.R
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589f3f7e3a7e8f8f8ccfc1ab28b1d452 *unitTests/test_phred2ASCIIOffset.R
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343295ff7ce87602517abdecae18c4e2 *unitTests/test_pileup_revbins.R
806da9a19c06d8da7be72f8854eff355 *unitTests/test_pileup_single_range.R
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36f997e813e6c6a5b9e14745c2a138fd *unitTests/test_testPairedEndBam.R
09319872279858389407e593e6e289d5 *unitTests/test_utilities.R
a8fc88d695f429bf8ec9ce89c95ba422 *usretc/i386/Rsamtools.mk
a8fc88d695f429bf8ec9ce89c95ba422 *usretc/x64/Rsamtools.mk
b9229533d30cd20095fd3e5ff1e2f0ac *usrlib/i386/libbam.a
15422a955ecc9f7e6c8d6a8a6ba17c69 *usrlib/i386/libbcf.a
495511642a30c29135e08c14af04cccf *usrlib/i386/libtabix.a
e790e87b88b7e0bbd86ef07dd144ed81 *usrlib/x64/libbam.a
121c270bea91585c81fd156f142921cd *usrlib/x64/libbcf.a
5623ee7421434a4e646c3f22e05a7388 *usrlib/x64/libtabix.a
