sponge_network {SPONGE} | R Documentation

## Prepare a sponge network for plotting

### Description

Prepare a sponge network for plotting

### Usage

    sponge_network(sponge_result, mir_data, target.genes = NULL,
      show.sponge.interaction = TRUE, show.mirnas = "none",
      min.interactions = 3)

### Arguments

`sponge_result` | ceRNA interactions as produced by the sponge method.
`mir_data` | miRNA interactions as produced by sponge_gene_miRNA_interaction_filter
`target.genes` | a character vector to select a subset of genes
`show.sponge.interaction` | whether to connect ceRNAs
`show.mirnas` | one of none, shared, all
`min.interactions` | minimum degree of a gene to be shown

### Value

a list of nodes and edges

### Examples

    sponge_network(ceRNA_interactions, mir_interactions)

[Package SPONGE version 1.0.3 Index]