Package: SeqVarTools
Version: 1.16.1
Type: Package
Title: Tools for variant data
Description: An interface to the fast-access storage format for VCF
        data provided in SeqArray, with tools for common operations and
        analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris@uw.edu>, Xiuwen Zheng <zhengx@uw.edu>, Adrienne Stilp <amstilp@uw.edu>
Depends: SeqArray
Imports: grDevices, graphics, stats, methods, gdsfmt, GenomicRanges,
        IRanges, S4Vectors, GWASExactHW, Biobase, logistf, dplyr, tidyr
Suggests: BiocGenerics, BiocStyle, RUnit, stringr
License: GPL-3
LazyData: yes
biocViews: SNP, GeneticVariability, Sequencing, Genetics
Collate: AllClasses.R AllGenerics.R AllUtilities.R
        Methods-SeqVarGDSClass.R Methods-SeqVarData.R
        Methods-Iterator.R chromWithPAR.R duplicateDiscordance.R hwe.R
        inbreedCoeff.R mendelErr.R pca.R setVariantID.R
        alternateAlleleDetection.R refFrac.R regression.R
NeedsCompilation: no
Packaged: 2018-03-18 00:05:20 UTC; biocbuild
Built: R 3.4.3; ; 2018-03-18 07:18:36 UTC; windows
