get_time_series_df_bio {TMixClust} | R Documentation

## Extracts a time series data frame from a Bioconductor Biobase ExpressionSet object.

### Description

`get_time_series_df_bio` creates a data frame with time series data from a Bioconductor Biobase ExpressionSet object.

### Usage

    get_time_series_df_bio(bio_obj)

### Arguments

`bio_obj` | Bioconductor Biobase ExpressionSet object. The assayData has to contain a matrix where each row is a gene time series and each column contains the time series values at each time point. The number of columns is equal to the number of time points, while the number of rows is equal to the number of genes.

### Value

A data frame containing the time series

### Author(s)

Monica Golumbeanu, monica.golumbeanu@bsse.ethz.ch

### References

Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A. (2017) Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection.

### Examples

    # Load the SOS pathway data from Bioconductor package SPEM
    library(SPEM)
    data(sos)
    sos_data = get_time_series_df_bio(sos)

    # Print the first lines of the retrieved time series data frame
    print(head(sos_data))

[Package TMixClust version 1.0.1 Index]