oncoprint.cbio {TRONCO} | R Documentation

## oncoprint.cbio

### Description

export input for cbio visualization at http://www.cbioportal.org/public-portal/oncoprinter.jsp

### Usage

    oncoprint.cbio(x, file = "oncoprint-cbio.txt", hom.del = "Homozygous Loss",
      het.loss = "Heterozygous Loss", gain = "Low-level Gain",
      amp = "High-level Gain")

### Arguments

`x` | A TRONCO compliant dataset.
`file` | name of the file where to save the output
`hom.del` | type of Homozygous Deletion
`het.loss` | type of Heterozygous Loss
`gain` | type of Gain
`amp` | type of Amplification

### Value

A file containing instruction for the CBio visualization Tool

### Examples

    data(crc_gistic)
    gistic = import.GISTIC(crc_gistic)
    oncoprint.cbio(gistic)

[Package TRONCO version 2.10.3 Index]