FAMEoutliers            FAME outlier detection
FindPeaks               Extract peaks from chromatogram files
ImportFameSettings      Retention time markers settings
ImportLibrary           Library import
ImportSamples           Sample definitions
NetCDFPeakFinding       Peak picking algorithm from CDF files
Profile                 Average the correlating masses for each
                        metabolite
ProfileCleanUp          Reduce redundancy of the profile
RIcorrect               Peak picking from CDF files and RI correction
TargetSearch            A targeted approach for GC-MS data.
TargetSearchGUI         A GUI for TargetSearch
Write.Results           Save TargetSearch result objects into files
baselineCorrection      Baseline correction algorithm
fixRI                   Fixing Retention Time Index Correction
medianRILib             Median RI library correction
peakCDFextraction       NetCDF to R
peakFind                Intensities and RI matrices
plotFAME                Plot a standard marker
plotPeak                Plot peaks
plotPeakSimple          Plot peaks - simple interface
plotRIdev               Plot Retention Time Index Deviation
plotSpectra             Plot a Spectra Comparison
quantMatrix             Create an intensity matrix using quantification
                        masses
ri2rt                   Retention Time Index to Retention Time
                        convertion
riMatrix                Retention Time Index Matrix
rt2ri                   Retention Time to Retention Time Index
                        convertion
sampleRI                Sample especific RI detection
text2bin                Convert RI files from text to binary format and
                        viceversa.
tsLib-class             Class for representing a reference library
tsMSdata-class          Class for representing MS data
tsProfile-class         Class for representing a MS profile
tsRim-class             Class for representing retention index markers
tsSample-class          Class for representing samples
writeLibText            Save a library object in text format
writeMSP                Save spectra in MSP format to be visualized in
                        NIST
