annotations {annotatr} | R Documentation

## example_annotations data

### Description

A `GRanges` of precomputed annotations for CpG features. Created by doing `build_annotations(genome='hg19', annotations = 'hg19_cpgs')`.

### Usage

    annotations

### Format

A `GRanges` object with the CpG feature annotations for hg19 and containing `mcols`:

id

  The internal ID for the annotation

tx_id

  All NA, since these are not associated with tx_ids

gene_id

  All NA, since there are not associated Entrez IDs

symbols

  All NA, since there are not associated gene symbols

type

  A character indicating the type of annotation. Including: 'hg19_cpg_islands', 'hg19_cpg_shores', 'hg19_cpg_shelves', and 'hg19_cpg_inter'.

### Source

The AnnotationHub resource for hg19 CpG features.

[Package annotatr version 1.4.1 Index]