# Prediction of intronic splicing branchpoints

## Documentation for package ‘branchpointer’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

gtfToExons | Convert GTF file to exon location file
makeBranchpointWindowForExons | Make branchpoint window regions
makeBranchpointWindowForSNP | Makes a branchpointer formatted GRanges object from refsnp ids
plotBranchpointWindow | Plots branchpointer predictions
predictBranchpoints | Predict branchpoint probability scores
predictionsToSummary | Convert SNP branchpoint predictions across the branchpoint window to an intronic summary
readQueryFile | Read a query file