importFunctionNonUCSC {chimeraviz} | R Documentation

## Alternative import function for Gviz::AlignmentsTrack

### Description

This alternative import function for use with Gviz::AlignmentsTrack imports a bamfile with non-UCSC chromosome names.

### Usage

    importFunctionNonUCSC(file, selection)

### Arguments

`file` | The bamfile.
`selection` | Which regions to get from the bamfile.

### Value

A GRanges object with coverage data for the selection.

[Package chimeraviz version 1.4.3 Index]