Package: chromswitch
Title: An R package to detect chromatin state switches from epigenomic
        data
Version: 1.0.0
Date: 2017-09-20
Authors@R: c(person("Selin", "Jessa", email = "selinjessa@gmail.com", role = c("aut", "cre")),
             person(c("Claudia", "L."), "Kleinman", role = "aut"))  
Description: Chromswitch implements a flexible method to detect chromatin state
    switches between samples in two biological conditions in a specific genomic
    region of interest given peaks or chromatin state calls from ChIP-seq data.
Depends: R (>= 3.4), GenomicRanges (>= 1.26.4)
Imports: cluster (>= 2.0.6), Biobase (>= 2.36.2), BiocParallel (>=
        1.8.2), DescTools (>= 0.99.19), dplyr (>= 0.5.0), gplots(>=
        3.0.1), graphics, grDevices, IRanges (>= 2.4.8), lazyeval (>=
        0.2.0), matrixStats (>= 0.52), magrittr (>= 1.5), mclust (>=
        5.3), methods, NMF (>= 0.20.6), rtracklayer (>= 1.36.4),
        S4Vectors (>= 0.14.4), stats, tidyr (>= 0.6.3)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Suggests: BiocStyle, devtools (>= 1.13.3), knitr, rmarkdown, testthat
RoxygenNote: 6.0.1
URL: https://github.com/sjessa/chromswitch
BugReports: https://github.com/sjessa/chromswitch/issues
biocViews: MultipleComparison, Transcription, GeneExpression,
        DifferentialPeakCalling, HistoneModification, Epigenetics,
        FunctionalGenomics, Clustering
NeedsCompilation: no
Packaged: 2017-10-31 02:24:33 UTC; biocbuild
Author: Selin Jessa [aut, cre],
  Claudia L. Kleinman [aut]
Maintainer: Selin Jessa <selinjessa@gmail.com>
Built: R 3.4.2; ; 2017-10-31 03:36:55 UTC; windows
