Package: cleanUpdTSeq
Type: Package
Title: This package classifies putative polyadenylation sites as true
        or false/internally oligodT primed
Version: 1.16.0
Date: 2015-10-02
Author: Sarah Sheppard, Jianhong Ou, Nathan Lawson, Lihua Julie Zhu
Maintainer: Sarah Sheppard <Sarah.Sheppard@umassmed.edu>; Jianhong Ou
 <Jianhong.Ou@umassmed.edu>; Lihua Julie Zhu
 <Julie.Zhu@umassmed.edu>
Depends: R (>= 2.15), BiocGenerics (>= 0.1.0), methods, BSgenome,
        BSgenome.Drerio.UCSC.danRer7, GenomicRanges, seqinr, e1071
Suggests: BiocStyle, knitr, RUnit
Description: This package uses the Naive Bayes classifier (from e1071)
        to assign probability values to putative polyadenylation sites
        (pA sites) based on training data from zebrafish. This will
        allow the user to separate true, biologically relevant pA sites
        from false, oligodT primed pA sites.
License: GPL-2
biocViews: Sequencing, SequenceMatching, Genetics, GeneRegulation
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-10-31 00:37:11 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 03:39:16 UTC; windows
