Package: consensusOV
Type: Package
Title: Gene expression-based subtype classification for high-grade
        serous ovarian cancer
Version: 1.0.0
Date: 2017-05-10
Author: Gregory M Chen, Lavanya Kannan, Ludwig Geistlinger, Victor
        Kofia, Levi Waldron, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Description: This package implements four major subtype classifiers for
        high-grade serous (HGS) ovarian cancer as described by Helland
        et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012),
        Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J
        Natl Cancer Inst, 2014). In addition, the package implements a
        consensus classifier, which consolidates and improves on the
        robustness of the proposed subtype classifiers, thereby
        providing reliable stratification of patients with HGS ovarian
        tumors of clearly defined subtype.
License: Artistic-2.0
Imports: Biobase, GSVA, gdata, genefu, limma, matrixStats,
        randomForest, stats, utils
Depends: R (>= 3.4)
URL: http://www.pmgenomics.ca/bhklab/software/consensusOV
Suggests: knitr, ggplot2
VignetteBuilder: knitr
RoxygenNote: 6.0.1
LazyData: true
biocViews: Classification, Clustering, DifferentialExpression,
        GeneExpression, Microarray, Transcriptomics
BugReports: https://github.com/bhklab/consensusOV/issues
NeedsCompilation: no
Packaged: 2017-10-31 02:18:39 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 03:52:00 UTC; windows
