22e1ef71d95a2163d08360c9db3d17b5 *DESCRIPTION
8432e370ed0fad643752cf78f1f486f4 *INDEX
db47a94391610c093c473998c9dbb135 *LICENSE
d8cdaea58c3c9afd87fa1f66e448ba21 *Meta/Rd.rds
f15bd6a4a3306e8edd5d0dcf26e64d22 *Meta/data.rds
a46f1debdc1f45796be2b2a0e6b3b378 *Meta/features.rds
a165fe29be7410690225e0d6d8ac6c84 *Meta/hsearch.rds
53a7ea334d93f9b8e1306b2483569993 *Meta/links.rds
1cde939921984bc12cd1b87ac7c92904 *Meta/nsInfo.rds
010f12ab9ebccb07d5c4be8812e8f590 *Meta/package.rds
c0ee40d91b4d6b9393be52d2eb08ff01 *Meta/vignette.rds
2194ee6d58d70d03a48b9e077c07572b *NAMESPACE
ae214e94efc3809625a495f69d28a0a4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/contiBAIT
b613db2ba6fa840b7f67626fa3f2e56e *R/contiBAIT.rdb
979ebe79adf3ccd4f97e2133c61b6c46 *R/contiBAIT.rdx
38ca579b4a5e11f81a5c7e7981c64a44 *data/exampleChrTable.rda
d78f0a39132b61a95ef9f2bcca1e2fdf *data/exampleContigOrder.rda
61669a35efcc9d3f2addc168ce3e5e22 *data/exampleCrickFreq.rda
8666cc1a7a68334aa279910be27d300d *data/exampleDividedChr.rda
156b1289acd0a043b3337fd7c60b87c3 *data/exampleLGList.rda
99c3979890126f124b53b36554dec6f9 *data/exampleLibList.rda
ae50e8282c8d58efef48581a5e0b80c2 *data/exampleReadCounts.rda
c3911909d1ae3c11e19be9859b015192 *data/exampleStrandFreq.rda
3592ad707980cf33b63c209409692a5b *data/exampleWCMatrix.rda
969b849e785636eadd607251fed3bf65 *data/exampleWatsonFreq.rda
146766aa78d1e6bbf0118311f1dcb8a0 *doc/contiBAIT.R
c96c4b3df0deaae8a5304eb23e03f284 *doc/contiBAIT.Rnw
d1db8f16e50519ccca6f3b2c1e334479 *doc/contiBAIT.pdf
73c7a0ecae545d0aca2e495b28b8f0fa *doc/index.html
28c66e5ba4a9e4a1df73a84ca0f15e02 *examples/BAIT.R
1df33e6f66cedf27f873fe04c2ab44e5 *examples/barplotLinkageGroupCalls.R
2281fdd3018be1ae345f701b23474184 *examples/clusterContigs.R
3fa9d091d7433ae82240a285a1bc715f *examples/contiBAIT.R
c292437acc8ab4ed6267522a6cffdc4d *examples/findSimilarLibraries.R
cf85cbfd254ac1882fef1165b1b68407 *examples/ideogramPlot.R
edab2ed994852199d51307581e1bee15 *examples/makeBoxPlot.R
dd68a923a88e51ee0eec53e758ade6b8 *examples/makeChrTable.R
04e9a6095b95c725b2cbb050ab79c15d *examples/mapGapFromOverlap.R
b461dad979e5f94b6524cd07cbb82aff *examples/orderAllLinkageGroups.R
fd4fa039bc574297c876346806c85a6f *examples/plotContigOrder.R
640f70fab80d62f5eff4ed45447295e3 *examples/plotLGDistances.R
88ccb24e8c39be65d8a485ca4105f917 *examples/plotWCdistribution.R
3a0f8482f8e914317f918cebf89482db *examples/preprocessStrandTable.R
1393999fa86c3e3de342527e2009211a *examples/reorientAndMergeLGs.R
92fdc7660c742dcf827e8f94e3480659 *examples/strandSeqFreqTable.R
09d7bad00b3f7b2526b582b2af569a2f *examples/thoroughBed.R
274068d32fc4d10e76583fc584e98f51 *examples/writeBed.R
5d192d7c26ec37f994b363939db8b688 *extdata/StrandSeqTestData_1.bam
93b83a8558f3c9bec45301e1647f0c20 *extdata/StrandSeqTestData_10.bam
c1921c8929a8da183d625c04cc1ba707 *extdata/StrandSeqTestData_11.bam
6c5ee708a3258a33c67d7a356220180e *extdata/StrandSeqTestData_12.bam
68ca7580fb9bfc57c7c4f8fce50d9050 *extdata/StrandSeqTestData_13.bam
fd287608ae971ed6970ae25181027727 *extdata/StrandSeqTestData_14.bam
42fdb255d56b6b2a8c586db4e71502e6 *extdata/StrandSeqTestData_15.bam
3b1866e105278d366b24134213a8a5ec *extdata/StrandSeqTestData_16.bam
afa443b017b952936d573f1d1775834d *extdata/StrandSeqTestData_17.bam
d59f17e442f25a27b5103371d64024b5 *extdata/StrandSeqTestData_18.bam
38c716101e79565a6064d08ad96cd78d *extdata/StrandSeqTestData_19.bam
e3faff96f537a10c9d2f2d6307e060ec *extdata/StrandSeqTestData_2.bam
25451af76593a4809e9ba3b54f1986ad *extdata/StrandSeqTestData_20.bam
3d691e4eb042e4cf5788d5198ff421be *extdata/StrandSeqTestData_21.bam
2cd40af19efaea7f7b88ad9cb3c3518d *extdata/StrandSeqTestData_22.bam
cc5c9df53a60b4c111f7705c87b6dfd3 *extdata/StrandSeqTestData_23.bam
746e2adb0a38080b5fcac3c68e4b8b28 *extdata/StrandSeqTestData_24.bam
5e628d91b817b9478e4b97f51fc10816 *extdata/StrandSeqTestData_25.bam
26ef6fe7e841daeeb764ad0ef50bf482 *extdata/StrandSeqTestData_26.bam
5ff984ad0119fcda1d02ae37cadf2607 *extdata/StrandSeqTestData_27.bam
ad480f0bbd7d3df1160042fa5e77b05f *extdata/StrandSeqTestData_28.bam
31f14182a7a40922cf9dfe27ef77ea1b *extdata/StrandSeqTestData_29.bam
4f8ba4c35297743c245fc8dce206646d *extdata/StrandSeqTestData_3.bam
4a477c6f8661f99b11bb2a3756f056c8 *extdata/StrandSeqTestData_30.bam
8a7e474bf00d221c1afbf704898e6477 *extdata/StrandSeqTestData_31.bam
df88307aeb645e59d743876e3918778c *extdata/StrandSeqTestData_32.bam
0e2d7b9710a260b86e95296f6c9ef5da *extdata/StrandSeqTestData_33.bam
9f658024fc2ccf802191b04ffcb2e90b *extdata/StrandSeqTestData_34.bam
308876e819ed504bd628287c35d92672 *extdata/StrandSeqTestData_35.bam
02722480cb92717921772e3fe9adf319 *extdata/StrandSeqTestData_4.bam
2ae21f5db52ae160fdb46eae34e19db3 *extdata/StrandSeqTestData_5.bam
6603402d71775fb04b9ba5e4994c14da *extdata/StrandSeqTestData_6.bam
cd1df19419b1e20ece4db1394fa3bb7a *extdata/StrandSeqTestData_7.bam
1ff8516780c262bac1ee0f34a1e1e9f1 *extdata/StrandSeqTestData_8.bam
85880db590cef2ee836f26c4ade45fd1 *extdata/StrandSeqTestData_9.bam
c9ffda5fa7b6844ded1bd180affeabc4 *help/AnIndex
a039c962f8730dde9f3d31e2af20d3bf *help/aliases.rds
d71841ec132105193e5dddfdd37b8159 *help/contiBAIT.rdb
d710369a6180f4ff248b3496eb043e29 *help/contiBAIT.rdx
96d79f2d87627e084946ca5c9e3eeef6 *help/paths.rds
d042e31c240d24ff447470f193f9d984 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c4fe10dad0ede93a6269741decb1e4f3 *libs/i386/contiBAIT.dll
bc8534aebf298cc31e6748681fb60dce *libs/x64/contiBAIT.dll
