dynRangePlot {erccdashboard} | R Documentation

## Produce signal-abundance plot to evaluate dynamic range

### Description

Produce signal-abundance plot to evaluate dynamic range

### Usage

    dynRangePlot(exDat, allPoints, labelReps)

### Arguments

`exDat` | list, contains input data and stores analysis results
`allPoints` | boolean, default is false, means of replicates will be plotted. If true then all replicates will be plotted as individual points.
`labelReps` | boolean, default is false. If true then replicates will be labeled.

### Examples

    data(SEQC.Example)

    exDat <- initDat(datType="count", isNorm=FALSE, exTable=MET.CTL.countDat,
                     filenameRoot="testRun", sample1Name="MET",
                     sample2Name="CTL", erccmix="RatioPair",
                     erccdilution=1/100, spikeVol=1, totalRNAmass=0.500,
                     choseFDR=0.1)

    exDat <- est_r_m(exDat)

    exDat <- dynRangePlot(exDat, allPoints="FALSE", labelReps ="FALSE")

    exDat$Figures$dynRangePlot

[Package erccdashboard version 1.12.1 Index]