stability {gespeR} | R Documentation

## stability

### Description

Retrieve a `Phenotypes` object with stability values from a `gespeR` object.

### Usage

    stability(object)

    ## S4 method for signature 'gespeR'
    stability(object)

### Arguments

`object` | A `gespeR` object

### Value

A `Phenotypes` object of SSPs

### Author(s)

Fabian Schmich

### Examples

    phenos <- Phenotypes(system.file("extdata", "Phenotypes_screen_A.txt", package = "gespeR"),
    type = "SSP",
    col.id = 1,
    col.score = 2)
    trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR")))
    res <- gespeR(phenotypes = phenos,
     target.relations = trels,
     mode = "stability",
     nbootstrap = 100,
     fraction = 0.67,
     threshold = 0.75,
     EV = 1,
     weakness = 0.8,
     ncores = 1)
    stab <- stability(res)
    ans <- merge(as.data.frame(gsp(res)), as.data.frame(stability(res)), by = "ID")
    colnames(ans)[2:3] <- c("Phenotype", "Stability")
    ans[order(ans$Stability, decreasing = TRUE),]

[Package gespeR version 1.10.1 Index]