Package: methylInheritance
Version: 1.2.0
Date: 2016-10-25
Title: Permutation-Based Analysis associating Conserved Differentially
        Methylated Elements from One Generation to the Next to a
        Treatment Effect
Description: Permutation analysis, based on Monte Carlo sampling, for
        testing the hypothesis that the number of conserved
        differentially methylated elements, between several
        generations, is associated to an effect inherited from a
        treatment and that stochastic effect can be dismissed.
Author: Astrid Deschênes, Pascal Belleau and Arnaud Droit
Author@R: c(person("Astrid", "DeschC*nes",
        email="adeschen@hotmail.com", role=c("cre","aut")),
        person("Pascal", "Belleau",
        email="pascal.belleau@crchuq.ulaval.ca", role=c("aut")),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Depends: R (>= 3.4)
Imports: methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors,
        methods, parallel, ggplot2, gridExtra, rebus
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit,
        methInheritSim
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/adeschen/methylInheritance
BugReports: https://github.com/adeschen/methylInheritance/issues
VignetteBuilder: knitr
biocViews: BiologicalQuestion, Epigenetics, DNAMethylation,
        DifferentialMethylation, MethylSeq, Software,
        StatisticalMethod, WholeGenome, Sequencing
Maintainer: Astrid Deschenes <adeschen@hotmail.com>
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-10-31 02:10:42 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 06:13:05 UTC; windows
