Package: oposSOM
Title: Comprehensive analysis of transciptome data
Version: 1.16.0
Description: This package translates microarray expression data into metadata
  of reduced dimension. It provides various sample-centered and group-centered
  visualizations, sample similarity analyses and functional enrichment analyses.
  The underlying SOM algorithm combines feature clustering, multidimensional
  scaling and dimension reduction, along with strong visualization capabilities.
  It enables extraction and description of functional expression modules inherent
  in the data.
Depends: R (>= 3.0), igraph (>= 1.0.0)
Imports: som, fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape,
        biomaRt, Biobase, arules
License: GPL (>=2)
Author: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de> and Martin Kalcher <mkalcher@porkbox.net>
Maintainer: Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>
URL: http://som.izbi.uni-leipzig.de
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        DataRepresentation, Visualization
NeedsCompilation: no
Packaged: 2017-10-31 00:55:31 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 06:48:40 UTC; windows
