Package: r3Cseq
Version: 1.24.0
Title: Analysis of Chromosome Conformation Capture and Next-generation
        Sequencing (3C-seq)
Author: Supat Thongjuea, MRC Molecular Haematology Unit, Weatherall
        Institute of Molecular Medicine, University of Oxford, UK
        <supat.thongjuea@ndcls.ox.ac.uk>
Maintainer: Supat Thongjuea <supat.thongjuea@ndcls.ox.ac.uk>
Depends: GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports: methods, GenomeInfoDb, IRanges, Biostrings, data.table, sqldf,
        RColorBrewer
Suggests: BSgenome.Mmusculus.UCSC.mm9.masked,
        BSgenome.Mmusculus.UCSC.mm10.masked,
        BSgenome.Hsapiens.UCSC.hg18.masked,
        BSgenome.Hsapiens.UCSC.hg19.masked,
        BSgenome.Rnorvegicus.UCSC.rn5.masked
Description: This package is an implementation of data analysis for the
        long-range interactions from 3C-seq assay.
License: GPL-3
URL: http://r3cseq.genereg.net
Collate: AllClasses.R AllGenerics.R Export.R FunctionInCommon.R
        FunctionsForBatchAnalysis.R RestrictionEnzymeFunctions.R
        FunctionsForNoReplicationAnalysis.R Report.R Visualize3Cseq.R
        Annotation.R
biocViews: Preprocessing, Sequencing
NeedsCompilation: no
Packaged: 2017-10-31 00:19:07 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 07:19:52 UTC; windows
