seByTumor_2016 {restfulSE} | R Documentation

## Given a BigQueryConnection to the 2016 ISB TCGA bigtables, obtain a SummarizedExperiment 'shell' rowData and colData

### Description

Given a BigQueryConnection to the 2016 ISB TCGA bigtables, obtain a SummarizedExperiment 'shell' rowData and colData

### Usage

    seByTumor_2016(tumorCode = "LUAD", assayTblName = "mRNA_UNC_HiSeq_RSEM",
      rdColsToKeep = c("original_gene_symbol", "HGNC_gene_symbol", "gene_id",
      "Study"), bqConn)

### Arguments

`tumorCode` | one of the concise TCGA codes in a character string – not checked, defaults to "LUAD", lung adenocarcinoma
`assayTblName` | the name of the assay whose annotation will be used as rowData
`rdColsToKeep` | columns of assay table to use in rowData component
`bqConn` | instance of BigQueryConnection from bigrquery

### Value

SummarizedExperiment instance, with BigQuery reference as assay

[Package restfulSE version 1.0.2 Index]