assay,BQSummarizedExperiment,missing-method {restfulSE} | R Documentation

## extract assay data

### Description

extract assay data

### Usage

    ## S4 method for signature 'BQSummarizedExperiment,missing'
    assay(x, i, ...)

### Arguments

`x` | BQSummarizedExperiment instance
`i` | index for retrieval, ignored at present
`...` | not used

### Value

matrix

### Note

Very experimental approach to retrieving numerical data given a SummarizedExperiment 'shell'. We need more checking of consistency between assay and clinical data before creating the shell. We use dcast to transform query result to a matrix, and some 'individuals' may have multiple contributions ... we use `fun.aggregate = max` and will see warnings until this is cleared up.

[Package restfulSE version 1.0.2 Index]