deprecated {scater} | R Documentation

## Retrieve a representation of gene expression

### Description

Deprecated from scater version 1.3.29.

Deprecated from scater version 1.5.2.

Deprecated from scater version 1.5.2.

### Usage

    getExprs(object)

    toCellDataSet(sce, exprs_values = "exprs")

    fromCellDataSet(cds, exprs_values = "tpm", logged = FALSE,
      logExprsOffset = 1)

### Arguments

`object` | An object of type `SCESet`
`sce` | An `SCESet` object
`exprs_values` | What should `exprs(cds)` be mapped from in the `SCESet`? Should be one of "exprs", "tpm", "fpkm", "counts"
`cds` | A `CellDataSet` from the `monocle` package
`logged` | logical, if `exprs_values="exprs"`, are the expression values already on the log2 scale, or not?
`logExprsOffset` | numeric, value to add prior to log-transformation.

### Value

A matrix representation of expression values.

An object of class `CellDataSet`

An object of class `SCESet`

### Examples

    ## Not run: "Deprecated"
    ## Not run: "Deprecated"

[Package scater version 1.6.3 Index]