Package: scfind
Type: Package
Title: A search tool for single cell RNA-seq data by gene lists
Version: 1.0.0
Author: Vladimir Kiselev
Maintainer: Vladimir Kiselev <vladimir.yu.kiselev@gmail.com>
Authors@R: c(person("Vladimir", "Kiselev",
             email = "vladimir.yu.kiselev@gmail.com",
             role=c("cre", "aut")),
             person("Martin", "Hemberg",
             role=c("aut")))
Description: Recently a very large collection of single-cell RNA-seq (scRNA-seq) datasets 
             has been generated and publicly released. For the collection to be 
             useful, the information must be organized in a way that supports 
             queries that are relevant to researchers. `scfind` builds an index 
             from scRNA-seq datasets which organizes the information in a suitable
             and compact manner so that the datasets can be very efficiently 
             searched for either cells or cell types in which a given list of 
             genes is expressed.
License: GPL-3
Imports: SingleCellExperiment, SummarizedExperiment, methods, stats,
        bit, dplyr, hash, reshape2, Rcpp(>= 0.12.12)
LinkingTo: Rcpp
Depends: R(>= 3.4)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: SingleCell, Software, RNASeq, Transcriptomics,
        DataRepresentation, Transcription, Sequencing, GeneExpression
NeedsCompilation: yes
URL: https://github.com/hemberg-lab/scfind
BugReports: https://support.bioconductor.org/t/scfind/
Packaged: 2017-10-31 02:20:54 UTC; biocbuild
Built: R 3.4.2; i386-w64-mingw32; 2017-10-31 07:55:09 UTC; windows
Archs: i386, x64
