groupOTU {treeio} | R Documentation

## groupOTU method

### Description

group tree based on selected OTU, will traceback to MRCA

### Usage

    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'beast'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'codeml'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'codeml_mlc'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'jplace'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'treedata'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'phangorn'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'phylip'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'paml_rst'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'phylo'
    groupOTU(object, focus, group_name = "group", ...)

    ## S4 method for signature 'r8s'
    groupOTU(object, focus, group_name = "group", tree = "TREE",
      ...)

### Arguments

`object` | supported objects, including phylo, paml_rst, codeml_mlc, codeml, jplace, beast, hyphy
`focus` | a vector of tip (label or number) or a list of tips.
`group_name` | name of the group, 'group' by default
`...` | additional parameter
`tree` | which tree selected

### Value

group index

[Package treeio version 1.2.2 Index]