phangorn-class {treeio} | R Documentation

## Class "phangorn" This class stores ancestral sequences inferred from 'phangorn'

### Description

Class "phangorn" This class stores ancestral sequences inferred from 'phangorn'

### Slots

`fields`

  available attributes

`phylo`

  phylo object

`seq_type`

  one of "NT" and "AA"

`tip_seq`

  sequences of tips

`ancseq`

  ancenstral sequences

`subs`

  sequence substitution

`AA_subs`

  Amino acid sequence substitution

`extraInfo`

  extra information

### Author(s)

Guangchuang Yu http://guangchuangyu.github.io

### See Also

paml_rst

[Package treeio version 1.2.2 Index]